Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4267 and GFF4268 are separated by 83 nucleotides GFF4268 and GFF4269 are separated by 37 nucleotides GFF4269 and GFF4270 are separated by 83 nucleotides
GFF4267 - Transcriptional regulator, AraC family, at 187,534 to 188,505
GFF4267
GFF4268 - Uncharacterized MFS-type transporter, at 188,589 to 189,806
GFF4268
GFF4269 - Uncharacterized SAM-dependent O-methyltransferase, at 189,844 to 190,500
GFF4269
GFF4270 - Transcriptional regulator, AcrR family, at 190,584 to 191,216
GFF4270
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 187.841 kb on + strand, within GFF4267 at 187.842 kb on - strand, within GFF4267 at 188.035 kb on + strand, within GFF4267 at 188.035 kb on + strand, within GFF4267 at 188.035 kb on + strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.088 kb on - strand, within GFF4267 at 188.659 kb on - strand at 189.108 kb on + strand, within GFF4268 at 189.393 kb on + strand, within GFF4268 at 189.393 kb on + strand, within GFF4268 at 189.393 kb on + strand, within GFF4268 at 189.394 kb on - strand, within GFF4268 at 189.394 kb on - strand, within GFF4268 at 189.394 kb on - strand, within GFF4268 at 189.394 kb on - strand, within GFF4268 at 189.394 kb on - strand, within GFF4268 at 189.394 kb on - strand, within GFF4268 at 189.897 kb on - strand at 189.930 kb on - strand, within GFF4269 at 189.930 kb on - strand, within GFF4269 at 190.013 kb on + strand, within GFF4269 at 190.223 kb on + strand, within GFF4269 at 190.223 kb on + strand, within GFF4269 at 190.223 kb on + strand, within GFF4269 at 190.224 kb on - strand, within GFF4269 at 190.224 kb on - strand, within GFF4269 at 190.224 kb on - strand, within GFF4269 at 190.224 kb on - strand, within GFF4269 at 190.296 kb on - strand, within GFF4269 at 190.353 kb on - strand, within GFF4269 at 190.761 kb on + strand, within GFF4270 at 190.767 kb on + strand, within GFF4270 at 190.767 kb on + strand, within GFF4270
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 187,841 + GFF4267 0.32 -1.9 187,842 - GFF4267 0.32 -0.7 188,035 + GFF4267 0.52 -3.3 188,035 + GFF4267 0.52 +0.7 188,035 + GFF4267 0.52 +0.6 188,036 - GFF4267 0.52 +0.2 188,036 - GFF4267 0.52 -0.9 188,036 - GFF4267 0.52 -2.0 188,036 - GFF4267 0.52 +0.1 188,036 - GFF4267 0.52 -0.2 188,036 - GFF4267 0.52 -2.0 188,036 - GFF4267 0.52 +0.5 188,036 - GFF4267 0.52 -2.9 188,088 - GFF4267 0.57 +0.0 188,659 - +2.3 189,108 + GFF4268 0.43 +0.0 189,393 + GFF4268 0.66 +0.2 189,393 + GFF4268 0.66 +1.2 189,393 + GFF4268 0.66 +0.1 189,394 - GFF4268 0.66 -1.3 189,394 - GFF4268 0.66 +3.9 189,394 - GFF4268 0.66 +0.5 189,394 - GFF4268 0.66 -2.6 189,394 - GFF4268 0.66 +1.3 189,394 - GFF4268 0.66 -3.4 189,897 - -1.3 189,930 - GFF4269 0.13 -3.7 189,930 - GFF4269 0.13 -1.3 190,013 + GFF4269 0.26 +0.7 190,223 + GFF4269 0.58 -2.1 190,223 + GFF4269 0.58 +0.1 190,223 + GFF4269 0.58 +0.1 190,224 - GFF4269 0.58 +1.5 190,224 - GFF4269 0.58 -0.4 190,224 - GFF4269 0.58 -1.9 190,224 - GFF4269 0.58 -1.7 190,296 - GFF4269 0.69 +0.3 190,353 - GFF4269 0.77 -0.2 190,761 + GFF4270 0.28 -0.5 190,767 + GFF4270 0.29 -1.3 190,767 + GFF4270 0.29 -1.6
Or see this region's nucleotide sequence