Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF425 and GFF426 overlap by 4 nucleotides GFF426 and GFF427 are separated by 122 nucleotides GFF427 and GFF428 are separated by 77 nucleotides
GFF425 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 460,610 to 461,659
GFF425
GFF426 - Cobyric acid synthase (EC 6.3.5.10), at 461,656 to 463,146
GFF426
GFF427 - no description, at 463,269 to 463,499
GFF427
GFF428 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 463,577 to 465,073
GFF428
Position (kb) 461
462
463
464 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.915 kb on + strand, within GFF426 at 462.324 kb on - strand, within GFF426 at 462.569 kb on + strand, within GFF426 at 462.569 kb on + strand, within GFF426 at 462.569 kb on + strand, within GFF426 at 462.570 kb on - strand, within GFF426 at 462.570 kb on - strand, within GFF426 at 462.917 kb on + strand, within GFF426 at 462.917 kb on + strand, within GFF426 at 462.917 kb on + strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 463.013 kb on + strand at 463.231 kb on + strand at 463.231 kb on + strand at 463.231 kb on + strand at 463.231 kb on + strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.295 kb on - strand, within GFF427 at 463.295 kb on - strand, within GFF427 at 463.381 kb on - strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.390 kb on - strand, within GFF427 at 463.390 kb on - strand, within GFF427 at 463.419 kb on + strand, within GFF427 at 463.419 kb on + strand, within GFF427 at 463.419 kb on + strand, within GFF427 at 463.420 kb on - strand, within GFF427 at 463.420 kb on - strand, within GFF427 at 463.420 kb on - strand, within GFF427 at 463.680 kb on + strand at 463.680 kb on + strand at 463.680 kb on + strand at 463.680 kb on + strand at 463.680 kb on + strand at 463.681 kb on - strand at 463.681 kb on - strand at 463.681 kb on - strand at 463.681 kb on - strand at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.765 kb on - strand, within GFF428 at 463.765 kb on - strand, within GFF428 at 463.914 kb on + strand, within GFF428 at 463.914 kb on + strand, within GFF428 at 463.915 kb on - strand, within GFF428 at 463.915 kb on - strand, within GFF428 at 464.064 kb on + strand, within GFF428
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 461,799 + -1.6 461,799 + -0.8 461,799 + -0.2 461,799 + +1.4 461,799 + +0.9 461,799 + -1.9 461,799 + -0.8 461,799 + -3.0 461,799 + +0.9 461,800 - +1.7 461,800 - -1.7 461,800 - -1.7 461,800 - +1.4 461,800 - -1.8 461,800 - -0.0 461,800 - +0.9 461,800 - -3.9 461,800 - -0.3 461,800 - -3.5 461,801 + -0.7 461,801 + -0.8 461,801 + -1.0 461,801 + -1.3 461,801 + -2.2 461,801 + -1.6 461,801 + -1.2 461,801 + -0.8 461,801 + +1.1 461,801 + -4.2 461,801 + -2.8 461,801 + -1.4 461,801 + -0.9 461,801 + -0.9 461,801 + -0.5 461,801 + +1.4 461,801 + -2.2 461,801 + -0.7 461,801 + -1.1 461,801 + -2.1 461,801 + +0.5 461,801 + -2.2 461,801 + -1.8 461,802 - -0.5 461,802 - -0.3 461,802 - -1.4 461,802 - -4.0 461,802 - +0.1 461,802 - +1.4 461,802 - +1.1 461,802 - -0.9 461,802 - +0.9 461,802 - -0.1 461,802 - -1.6 461,802 - -2.9 461,802 - -0.4 461,802 - +1.2 461,802 - -0.3 461,802 - -0.2 461,802 - +0.1 461,802 - +0.1 461,802 - +0.1 461,802 - -0.2 461,802 - -1.0 461,802 - +0.4 461,802 - -0.9 461,802 - -1.6 461,802 - +0.3 461,802 - +0.4 461,805 + GFF426 0.10 -2.4 461,805 + GFF426 0.10 +0.6 461,805 + GFF426 0.10 -0.9 461,805 + GFF426 0.10 -0.6 461,805 + GFF426 0.10 -0.2 461,805 + GFF426 0.10 -3.8 461,806 - GFF426 0.10 -1.8 461,806 - GFF426 0.10 -2.5 461,806 - GFF426 0.10 +1.2 461,806 - GFF426 0.10 +1.0 461,806 - GFF426 0.10 -3.0 461,915 + GFF426 0.17 -0.8 462,324 - GFF426 0.45 -2.8 462,569 + GFF426 0.61 -2.0 462,569 + GFF426 0.61 +3.2 462,569 + GFF426 0.61 -1.6 462,570 - GFF426 0.61 -0.3 462,570 - GFF426 0.61 -3.3 462,917 + GFF426 0.85 -2.6 462,917 + GFF426 0.85 +0.2 462,917 + GFF426 0.85 +0.2 462,918 - GFF426 0.85 +0.6 462,918 - GFF426 0.85 +0.2 462,918 - GFF426 0.85 -0.1 462,918 - GFF426 0.85 -0.4 463,013 + -2.1 463,231 + +0.2 463,231 + -0.2 463,231 + -0.0 463,231 + -3.0 463,232 - -2.2 463,232 - -1.8 463,232 - -0.6 463,232 - -2.7 463,232 - -1.4 463,232 - +3.0 463,294 + GFF427 0.11 -2.1 463,294 + GFF427 0.11 -0.6 463,294 + GFF427 0.11 -0.7 463,294 + GFF427 0.11 -1.6 463,294 + GFF427 0.11 -3.0 463,294 + GFF427 0.11 -0.5 463,294 + GFF427 0.11 -0.5 463,295 - GFF427 0.11 -0.6 463,295 - GFF427 0.11 +1.3 463,381 - GFF427 0.48 +0.6 463,389 + GFF427 0.52 -3.2 463,389 + GFF427 0.52 +1.6 463,389 + GFF427 0.52 +1.2 463,389 + GFF427 0.52 +1.3 463,390 - GFF427 0.52 -4.4 463,390 - GFF427 0.52 +0.1 463,419 + GFF427 0.65 -0.2 463,419 + GFF427 0.65 +0.0 463,419 + GFF427 0.65 +0.4 463,420 - GFF427 0.65 -0.9 463,420 - GFF427 0.65 -1.4 463,420 - GFF427 0.65 +0.7 463,680 + -1.6 463,680 + -3.8 463,680 + -2.4 463,680 + +1.1 463,680 + +0.2 463,681 - -2.5 463,681 - -0.7 463,681 - +2.4 463,681 - +0.1 463,764 + GFF428 0.12 +1.2 463,764 + GFF428 0.12 -0.8 463,764 + GFF428 0.12 -1.1 463,764 + GFF428 0.12 -0.8 463,764 + GFF428 0.12 -0.5 463,764 + GFF428 0.12 -0.4 463,765 - GFF428 0.13 -3.2 463,765 - GFF428 0.13 +2.3 463,914 + GFF428 0.23 -0.8 463,914 + GFF428 0.23 -4.2 463,915 - GFF428 0.23 -0.2 463,915 - GFF428 0.23 -1.9 464,064 + GFF428 0.33 -0.9
Or see this region's nucleotide sequence