Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4203 and GFF4204 overlap by 4 nucleotides GFF4204 and GFF4205 overlap by 4 nucleotides GFF4205 and GFF4206 overlap by 4 nucleotides GFF4206 and GFF4207 are separated by 14 nucleotides
GFF4203 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 118,374 to 120,509
GFF4203
GFF4204 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 120,506 to 121,264
GFF4204
GFF4205 - hypothetical protein, at 121,261 to 121,641
GFF4205
GFF4206 - gamma-BHC dehydrochlorinase, at 121,638 to 122,183
GFF4206
GFF4207 - hypothetical protein, at 122,198 to 123,457
GFF4207
Position (kb) 120
121
122 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 121.041 kb on + strand, within GFF4204 at 121.041 kb on + strand, within GFF4204 at 121.042 kb on - strand, within GFF4204 at 121.042 kb on - strand, within GFF4204 at 121.042 kb on - strand, within GFF4204 at 122.046 kb on + strand, within GFF4206 at 122.046 kb on + strand, within GFF4206 at 122.046 kb on + strand, within GFF4206 at 122.046 kb on + strand, within GFF4206 at 122.047 kb on - strand, within GFF4206 at 122.047 kb on - strand, within GFF4206 at 122.152 kb on - strand at 122.152 kb on - strand at 122.152 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 121,041 + GFF4204 0.70 -1.3 121,041 + GFF4204 0.70 -2.6 121,042 - GFF4204 0.71 +0.6 121,042 - GFF4204 0.71 -1.4 121,042 - GFF4204 0.71 +0.8 122,046 + GFF4206 0.75 -0.4 122,046 + GFF4206 0.75 -2.1 122,046 + GFF4206 0.75 -0.3 122,046 + GFF4206 0.75 +1.1 122,047 - GFF4206 0.75 +0.1 122,047 - GFF4206 0.75 +0.9 122,152 - -2.9 122,152 - +0.7 122,152 - +0.7
Or see this region's nucleotide sequence