Strain Fitness in Variovorax sp. SCN45 around GFF4175

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4174 and GFF4175 are separated by 45 nucleotidesGFF4175 and GFF4176 are separated by 90 nucleotidesGFF4176 and GFF4177 overlap by 4 nucleotides GFF4174 - FIG00919961: hypothetical protein, at 79,327 to 80,310 GFF4174 GFF4175 - FMN reductase (NADH) (EC 1.5.1.42), at 80,356 to 80,949 GFF4175 GFF4176 - Transcriptional activator MetR, at 81,040 to 81,939 GFF4176 GFF4177 - Epoxyqueuosine reductase (EC 1.17.99.6) QueH, at 81,936 to 82,160 GFF4177 Position (kb) 80 81Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 79.370 kb on + strandat 79.371 kb on - strandat 79.372 kb on - strandat 79.442 kb on + strand, within GFF4174at 79.442 kb on + strand, within GFF4174at 79.442 kb on + strand, within GFF4174at 79.443 kb on - strand, within GFF4174at 79.443 kb on - strand, within GFF4174at 79.463 kb on + strand, within GFF4174at 79.463 kb on + strand, within GFF4174at 79.463 kb on + strand, within GFF4174at 79.464 kb on - strand, within GFF4174at 79.490 kb on + strand, within GFF4174at 79.520 kb on + strand, within GFF4174at 79.520 kb on + strand, within GFF4174at 79.520 kb on + strand, within GFF4174at 79.520 kb on + strand, within GFF4174at 79.520 kb on + strand, within GFF4174at 79.521 kb on - strand, within GFF4174at 79.521 kb on - strand, within GFF4174at 79.521 kb on - strand, within GFF4174at 79.521 kb on - strand, within GFF4174at 79.536 kb on - strand, within GFF4174at 79.592 kb on + strand, within GFF4174at 79.592 kb on + strand, within GFF4174at 79.592 kb on + strand, within GFF4174at 79.593 kb on - strand, within GFF4174at 79.593 kb on - strand, within GFF4174at 79.619 kb on + strand, within GFF4174at 79.619 kb on + strand, within GFF4174at 79.619 kb on + strand, within GFF4174at 79.620 kb on - strand, within GFF4174at 79.620 kb on - strand, within GFF4174at 79.688 kb on + strand, within GFF4174at 79.688 kb on + strand, within GFF4174at 79.688 kb on + strand, within GFF4174at 79.689 kb on - strand, within GFF4174at 79.763 kb on + strand, within GFF4174at 79.764 kb on - strand, within GFF4174at 79.764 kb on - strand, within GFF4174at 79.764 kb on - strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.823 kb on + strand, within GFF4174at 79.824 kb on - strand, within GFF4174at 79.824 kb on - strand, within GFF4174at 79.824 kb on - strand, within GFF4174at 79.852 kb on + strand, within GFF4174at 79.852 kb on + strand, within GFF4174at 79.852 kb on + strand, within GFF4174at 79.852 kb on + strand, within GFF4174at 79.853 kb on - strand, within GFF4174at 79.853 kb on - strand, within GFF4174at 79.853 kb on - strand, within GFF4174at 79.853 kb on - strand, within GFF4174at 79.854 kb on - strand, within GFF4174at 79.913 kb on + strand, within GFF4174at 79.913 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.952 kb on + strand, within GFF4174at 79.953 kb on - strand, within GFF4174at 79.953 kb on - strand, within GFF4174at 79.953 kb on - strand, within GFF4174at 79.953 kb on - strand, within GFF4174at 80.001 kb on + strand, within GFF4174at 80.002 kb on - strand, within GFF4174at 80.002 kb on - strand, within GFF4174at 80.026 kb on + strand, within GFF4174at 80.026 kb on + strand, within GFF4174at 80.108 kb on + strand, within GFF4174at 80.109 kb on - strand, within GFF4174at 80.212 kb on + strandat 80.212 kb on + strandat 80.213 kb on - strandat 80.213 kb on - strandat 80.258 kb on + strandat 80.258 kb on + strandat 80.258 kb on + strandat 80.338 kb on + strandat 80.338 kb on + strandat 80.338 kb on + strandat 80.339 kb on - strandat 80.339 kb on - strandat 80.339 kb on - strandat 80.339 kb on - strandat 80.675 kb on + strand, within GFF4175at 80.675 kb on + strand, within GFF4175at 80.676 kb on - strand, within GFF4175at 80.676 kb on - strand, within GFF4175at 80.676 kb on - strand, within GFF4175at 80.917 kb on + strandat 80.918 kb on - strandat 80.918 kb on - strandat 80.918 kb on - strandat 80.996 kb on + strandat 81.230 kb on - strand, within GFF4176at 81.349 kb on + strand, within GFF4176at 81.349 kb on + strand, within GFF4176at 81.529 kb on + strand, within GFF4176at 81.529 kb on + strand, within GFF4176at 81.530 kb on - strand, within GFF4176at 81.581 kb on - strand, within GFF4176at 81.623 kb on - strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.652 kb on + strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.653 kb on - strand, within GFF4176at 81.752 kb on + strand, within GFF4176at 81.784 kb on + strand, within GFF4176at 81.784 kb on + strand, within GFF4176at 81.883 kb on + strandat 81.883 kb on + strandat 81.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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79,370 + +2.7
79,371 - -1.9
79,372 - +1.0
79,442 + GFF4174 0.12 -2.4
79,442 + GFF4174 0.12 -4.3
79,442 + GFF4174 0.12 +0.1
79,443 - GFF4174 0.12 -0.5
79,443 - GFF4174 0.12 +2.0
79,463 + GFF4174 0.14 -1.4
79,463 + GFF4174 0.14 -0.3
79,463 + GFF4174 0.14 -0.6
79,464 - GFF4174 0.14 -1.1
79,490 + GFF4174 0.17 -0.6
79,520 + GFF4174 0.20 -1.1
79,520 + GFF4174 0.20 -0.3
79,520 + GFF4174 0.20 -2.0
79,520 + GFF4174 0.20 +0.8
79,520 + GFF4174 0.20 -1.3
79,521 - GFF4174 0.20 -1.7
79,521 - GFF4174 0.20 -1.3
79,521 - GFF4174 0.20 -1.3
79,521 - GFF4174 0.20 -1.7
79,536 - GFF4174 0.21 -2.5
79,592 + GFF4174 0.27 -1.8
79,592 + GFF4174 0.27 +0.1
79,592 + GFF4174 0.27 -2.1
79,593 - GFF4174 0.27 -1.1
79,593 - GFF4174 0.27 -0.0
79,619 + GFF4174 0.30 -1.3
79,619 + GFF4174 0.30 -0.6
79,619 + GFF4174 0.30 -0.3
79,620 - GFF4174 0.30 -1.3
79,620 - GFF4174 0.30 +1.4
79,688 + GFF4174 0.37 +0.7
79,688 + GFF4174 0.37 +1.0
79,688 + GFF4174 0.37 +2.3
79,689 - GFF4174 0.37 +0.1
79,763 + GFF4174 0.44 +2.4
79,764 - GFF4174 0.44 -2.0
79,764 - GFF4174 0.44 +2.7
79,764 - GFF4174 0.44 +0.9
79,823 + GFF4174 0.50 +0.1
79,823 + GFF4174 0.50 +0.7
79,823 + GFF4174 0.50 -1.4
79,823 + GFF4174 0.50 -2.0
79,823 + GFF4174 0.50 -0.8
79,823 + GFF4174 0.50 +3.3
79,824 - GFF4174 0.51 +0.5
79,824 - GFF4174 0.51 -3.5
79,824 - GFF4174 0.51 +0.8
79,852 + GFF4174 0.53 +0.1
79,852 + GFF4174 0.53 -0.5
79,852 + GFF4174 0.53 +0.7
79,852 + GFF4174 0.53 -1.3
79,853 - GFF4174 0.53 +1.7
79,853 - GFF4174 0.53 +0.7
79,853 - GFF4174 0.53 -1.6
79,853 - GFF4174 0.53 +0.1
79,854 - GFF4174 0.54 -1.6
79,913 + GFF4174 0.60 -2.1
79,913 + GFF4174 0.60 -2.0
79,952 + GFF4174 0.64 -0.6
79,952 + GFF4174 0.64 +0.8
79,952 + GFF4174 0.64 -0.9
79,952 + GFF4174 0.64 +1.5
79,952 + GFF4174 0.64 -2.3
79,952 + GFF4174 0.64 -0.3
79,953 - GFF4174 0.64 +0.1
79,953 - GFF4174 0.64 -0.8
79,953 - GFF4174 0.64 -1.9
79,953 - GFF4174 0.64 -1.3
80,001 + GFF4174 0.68 -3.6
80,002 - GFF4174 0.69 +0.6
80,002 - GFF4174 0.69 -1.3
80,026 + GFF4174 0.71 +0.7
80,026 + GFF4174 0.71 -2.1
80,108 + GFF4174 0.79 -1.0
80,109 - GFF4174 0.79 +1.3
80,212 + -1.3
80,212 + +0.1
80,213 - -0.3
80,213 - -0.2
80,258 + -0.5
80,258 + -0.6
80,258 + -0.3
80,338 + -1.1
80,338 + +0.7
80,338 + -0.9
80,339 - +0.2
80,339 - -1.9
80,339 - +0.1
80,339 - +0.4
80,675 + GFF4175 0.54 -1.9
80,675 + GFF4175 0.54 -3.1
80,676 - GFF4175 0.54 -0.4
80,676 - GFF4175 0.54 -0.4
80,676 - GFF4175 0.54 -0.6
80,917 + -1.6
80,918 - -0.6
80,918 - +1.0
80,918 - +0.9
80,996 + -0.5
81,230 - GFF4176 0.21 +0.1
81,349 + GFF4176 0.34 -1.4
81,349 + GFF4176 0.34 -1.1
81,529 + GFF4176 0.54 +0.5
81,529 + GFF4176 0.54 +0.1
81,530 - GFF4176 0.54 -0.1
81,581 - GFF4176 0.60 -3.0
81,623 - GFF4176 0.65 -1.8
81,652 + GFF4176 0.68 +0.3
81,652 + GFF4176 0.68 +0.4
81,652 + GFF4176 0.68 +1.5
81,652 + GFF4176 0.68 -0.5
81,652 + GFF4176 0.68 +0.1
81,652 + GFF4176 0.68 +0.1
81,652 + GFF4176 0.68 +0.4
81,652 + GFF4176 0.68 -1.0
81,652 + GFF4176 0.68 -2.1
81,652 + GFF4176 0.68 -1.7
81,652 + GFF4176 0.68 +2.6
81,652 + GFF4176 0.68 +0.1
81,652 + GFF4176 0.68 -0.4
81,652 + GFF4176 0.68 +1.3
81,653 - GFF4176 0.68 -1.1
81,653 - GFF4176 0.68 -0.5
81,653 - GFF4176 0.68 -1.3
81,653 - GFF4176 0.68 +0.3
81,653 - GFF4176 0.68 -1.9
81,653 - GFF4176 0.68 -0.1
81,653 - GFF4176 0.68 +1.7
81,653 - GFF4176 0.68 -0.3
81,653 - GFF4176 0.68 -0.2
81,653 - GFF4176 0.68 +1.0
81,653 - GFF4176 0.68 -2.7
81,653 - GFF4176 0.68 +1.0
81,653 - GFF4176 0.68 +0.7
81,653 - GFF4176 0.68 +2.2
81,752 + GFF4176 0.79 -2.8
81,784 + GFF4176 0.83 -2.7
81,784 + GFF4176 0.83 -1.4
81,883 + -0.4
81,883 + +0.4
81,884 - +0.0

Or see this region's nucleotide sequence