Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3986 and GFF3987 are separated by 53 nucleotides GFF3987 and GFF3988 overlap by 4 nucleotides GFF3988 and GFF3989 are separated by 2 nucleotides GFF3989 and GFF3990 are separated by 6 nucleotides
GFF3986 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 190,701 to 191,447
GFF3986
GFF3987 - 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 191,501 to 192,277
GFF3987
GFF3988 - Transcriptional regulator, MarR family, at 192,274 to 192,804
GFF3988
GFF3989 - PUTATIVE 4-HYDROXYBENZOYL-COA THIOESTERASE PROTEIN( EC:3.1.2.23 ), at 192,807 to 193,241
GFF3989
GFF3990 - hypothetical protein, at 193,248 to 193,643
GFF3990
Position (kb) 192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 191.373 kb on + strand at 191.504 kb on + strand at 191.505 kb on - strand at 191.709 kb on + strand, within GFF3987 at 191.709 kb on + strand, within GFF3987 at 191.710 kb on - strand, within GFF3987 at 191.917 kb on + strand, within GFF3987 at 191.946 kb on - strand, within GFF3987 at 191.946 kb on - strand, within GFF3987 at 191.946 kb on - strand, within GFF3987 at 191.946 kb on - strand, within GFF3987 at 191.946 kb on - strand, within GFF3987 at 191.951 kb on + strand, within GFF3987 at 191.951 kb on + strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.963 kb on + strand, within GFF3987 at 191.964 kb on - strand, within GFF3987 at 192.059 kb on + strand, within GFF3987 at 192.061 kb on + strand, within GFF3987 at 192.062 kb on - strand, within GFF3987 at 192.393 kb on + strand, within GFF3988 at 192.445 kb on - strand, within GFF3988 at 192.466 kb on + strand, within GFF3988 at 192.467 kb on - strand, within GFF3988 at 192.467 kb on - strand, within GFF3988 at 192.487 kb on + strand, within GFF3988 at 192.523 kb on + strand, within GFF3988 at 192.523 kb on + strand, within GFF3988 at 192.524 kb on - strand, within GFF3988 at 192.524 kb on - strand, within GFF3988 at 192.524 kb on - strand, within GFF3988 at 192.741 kb on + strand, within GFF3988 at 192.883 kb on - strand, within GFF3989 at 192.892 kb on - strand, within GFF3989 at 192.892 kb on - strand, within GFF3989 at 192.951 kb on + strand, within GFF3989 at 192.951 kb on + strand, within GFF3989 at 192.952 kb on - strand, within GFF3989 at 193.274 kb on + strand at 193.515 kb on + strand, within GFF3990 at 193.515 kb on + strand, within GFF3990 at 193.516 kb on - strand, within GFF3990 at 193.516 kb on - strand, within GFF3990 at 193.516 kb on - strand, within GFF3990 at 193.516 kb on - strand, within GFF3990 at 193.634 kb on + strand at 193.635 kb on - strand at 193.759 kb on - strand at 193.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 191,373 + -0.8 191,504 + -1.8 191,505 - +0.1 191,709 + GFF3987 0.27 -2.4 191,709 + GFF3987 0.27 -0.2 191,710 - GFF3987 0.27 -1.3 191,917 + GFF3987 0.54 +0.2 191,946 - GFF3987 0.57 -1.5 191,946 - GFF3987 0.57 -1.2 191,946 - GFF3987 0.57 +0.2 191,946 - GFF3987 0.57 -2.9 191,946 - GFF3987 0.57 -1.0 191,951 + GFF3987 0.58 +0.7 191,951 + GFF3987 0.58 -1.7 191,952 - GFF3987 0.58 -0.8 191,952 - GFF3987 0.58 -0.1 191,952 - GFF3987 0.58 +2.0 191,952 - GFF3987 0.58 -0.2 191,952 - GFF3987 0.58 -0.6 191,952 - GFF3987 0.58 -2.5 191,963 + GFF3987 0.59 -1.0 191,964 - GFF3987 0.60 +0.2 192,059 + GFF3987 0.72 +0.7 192,061 + GFF3987 0.72 -0.8 192,062 - GFF3987 0.72 -1.2 192,393 + GFF3988 0.22 -0.7 192,445 - GFF3988 0.32 +1.9 192,466 + GFF3988 0.36 -0.2 192,467 - GFF3988 0.36 +0.8 192,467 - GFF3988 0.36 -1.8 192,487 + GFF3988 0.40 +0.8 192,523 + GFF3988 0.47 +0.6 192,523 + GFF3988 0.47 -0.7 192,524 - GFF3988 0.47 +0.0 192,524 - GFF3988 0.47 +0.6 192,524 - GFF3988 0.47 +0.2 192,741 + GFF3988 0.88 -0.0 192,883 - GFF3989 0.17 -1.4 192,892 - GFF3989 0.20 -1.2 192,892 - GFF3989 0.20 -1.5 192,951 + GFF3989 0.33 -0.0 192,951 + GFF3989 0.33 -0.5 192,952 - GFF3989 0.33 +0.5 193,274 + +0.8 193,515 + GFF3990 0.67 +0.6 193,515 + GFF3990 0.67 +0.0 193,516 - GFF3990 0.68 -0.2 193,516 - GFF3990 0.68 -2.0 193,516 - GFF3990 0.68 +1.0 193,516 - GFF3990 0.68 +2.3 193,634 + -0.2 193,635 - +2.2 193,759 - -0.1 193,759 - +0.5
Or see this region's nucleotide sequence