Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3947 and GFF3948 are separated by 7 nucleotides GFF3948 and GFF3949 are separated by 180 nucleotides GFF3949 and GFF3950 are separated by 16 nucleotides GFF3950 and GFF3951 are separated by 16 nucleotides
GFF3947 - Putative transmembrane protein, at 150,582 to 151,028
GFF3947
GFF3948 - Acetyltransferase, GNAT family, at 151,036 to 151,560
GFF3948
GFF3949 - SSU ribosomal protein S16p, at 151,741 to 152,004
GFF3949
GFF3950 - 16S rRNA processing protein RimM, at 152,021 to 152,575
GFF3950
GFF3951 - tRNA (guanine(37)-N(1))-methyltransferase (EC 2.1.1.228), at 152,592 to 153,338
GFF3951
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 150.874 kb on + strand, within GFF3947 at 150.874 kb on + strand, within GFF3947 at 150.874 kb on + strand, within GFF3947 at 150.874 kb on + strand, within GFF3947 at 150.874 kb on + strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.898 kb on + strand, within GFF3947 at 150.898 kb on + strand, within GFF3947 at 150.899 kb on - strand, within GFF3947 at 150.899 kb on - strand, within GFF3947 at 150.899 kb on - strand, within GFF3947 at 150.961 kb on + strand, within GFF3947 at 150.961 kb on + strand, within GFF3947 at 150.962 kb on - strand, within GFF3947 at 150.962 kb on - strand, within GFF3947 at 150.962 kb on - strand, within GFF3947 at 150.962 kb on - strand, within GFF3947 at 150.962 kb on - strand, within GFF3947 at 151.083 kb on - strand at 151.084 kb on + strand at 151.084 kb on + strand at 151.084 kb on + strand at 151.084 kb on + strand at 151.084 kb on + strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.325 kb on + strand, within GFF3948 at 151.326 kb on - strand, within GFF3948 at 151.397 kb on + strand, within GFF3948 at 151.397 kb on + strand, within GFF3948 at 151.397 kb on + strand, within GFF3948 at 151.398 kb on - strand, within GFF3948 at 151.398 kb on - strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.615 kb on + strand at 151.615 kb on + strand at 151.615 kb on + strand at 151.615 kb on + strand at 151.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 150,874 + GFF3947 0.65 +2.2 150,874 + GFF3947 0.65 -1.3 150,874 + GFF3947 0.65 -1.2 150,874 + GFF3947 0.65 -1.2 150,874 + GFF3947 0.65 -2.2 150,875 - GFF3947 0.66 +0.2 150,875 - GFF3947 0.66 +1.5 150,875 - GFF3947 0.66 +1.2 150,875 - GFF3947 0.66 -3.1 150,875 - GFF3947 0.66 +0.7 150,875 - GFF3947 0.66 +0.7 150,898 + GFF3947 0.71 -1.9 150,898 + GFF3947 0.71 -2.2 150,899 - GFF3947 0.71 -1.8 150,899 - GFF3947 0.71 -1.8 150,899 - GFF3947 0.71 -1.8 150,961 + GFF3947 0.85 +2.7 150,961 + GFF3947 0.85 +0.8 150,962 - GFF3947 0.85 +0.8 150,962 - GFF3947 0.85 -0.7 150,962 - GFF3947 0.85 +0.4 150,962 - GFF3947 0.85 -1.9 150,962 - GFF3947 0.85 -1.0 151,083 - -0.0 151,084 + +1.5 151,084 + -0.8 151,084 + -1.0 151,084 + -1.2 151,084 + -0.5 151,085 - -0.2 151,085 - +0.3 151,085 - -1.0 151,085 - -0.3 151,085 - +1.3 151,085 - +1.0 151,085 - +1.9 151,085 - +0.4 151,298 + GFF3948 0.50 +0.8 151,298 + GFF3948 0.50 +1.6 151,298 + GFF3948 0.50 -1.6 151,298 + GFF3948 0.50 +0.6 151,298 + GFF3948 0.50 +2.5 151,298 + GFF3948 0.50 -1.9 151,298 + GFF3948 0.50 -2.4 151,298 + GFF3948 0.50 -1.0 151,298 + GFF3948 0.50 -1.9 151,298 + GFF3948 0.50 -1.0 151,298 + GFF3948 0.50 +4.0 151,298 + GFF3948 0.50 -0.3 151,298 + GFF3948 0.50 -2.4 151,298 + GFF3948 0.50 +0.2 151,298 + GFF3948 0.50 +1.2 151,298 + GFF3948 0.50 +0.4 151,298 + GFF3948 0.50 +1.5 151,298 + GFF3948 0.50 -0.8 151,298 + GFF3948 0.50 +0.2 151,299 - GFF3948 0.50 -2.4 151,299 - GFF3948 0.50 +0.0 151,299 - GFF3948 0.50 +0.5 151,299 - GFF3948 0.50 -2.9 151,299 - GFF3948 0.50 -0.1 151,299 - GFF3948 0.50 +0.2 151,299 - GFF3948 0.50 -1.6 151,299 - GFF3948 0.50 +0.8 151,299 - GFF3948 0.50 -0.9 151,299 - GFF3948 0.50 -0.3 151,299 - GFF3948 0.50 +1.6 151,299 - GFF3948 0.50 +0.0 151,299 - GFF3948 0.50 -0.8 151,299 - GFF3948 0.50 +0.6 151,299 - GFF3948 0.50 -2.0 151,299 - GFF3948 0.50 -0.8 151,325 + GFF3948 0.55 -0.7 151,326 - GFF3948 0.55 +0.6 151,397 + GFF3948 0.69 -3.3 151,397 + GFF3948 0.69 -0.9 151,397 + GFF3948 0.69 +0.1 151,398 - GFF3948 0.69 -1.8 151,398 - GFF3948 0.69 +1.1 151,502 + GFF3948 0.89 +0.2 151,502 + GFF3948 0.89 +1.8 151,502 + GFF3948 0.89 +1.5 151,502 + GFF3948 0.89 +0.4 151,502 + GFF3948 0.89 -2.6 151,502 + GFF3948 0.89 -2.3 151,502 + GFF3948 0.89 -0.4 151,502 + GFF3948 0.89 +0.0 151,503 - GFF3948 0.89 +0.2 151,503 - GFF3948 0.89 -0.5 151,503 - GFF3948 0.89 +0.4 151,503 - GFF3948 0.89 +0.4 151,503 - GFF3948 0.89 -1.8 151,503 - GFF3948 0.89 -1.4 151,503 - GFF3948 0.89 -1.7 151,503 - GFF3948 0.89 +1.8 151,503 - GFF3948 0.89 -2.8 151,503 - GFF3948 0.89 -2.9 151,503 - GFF3948 0.89 -0.6 151,503 - GFF3948 0.89 -1.6 151,615 + -0.9 151,615 + +1.5 151,615 + -0.2 151,615 + +0.3 151,616 - -2.4
Or see this region's nucleotide sequence