Strain Fitness in Variovorax sp. SCN45 around GFF3787

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3786 and GFF3787 are separated by 10 nucleotidesGFF3787 and GFF3788 are separated by 65 nucleotides GFF3786 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 280,213 to 281,826 GFF3786 GFF3787 - Biotin carboxylase (EC 6.3.4.14), at 281,837 to 285,130 GFF3787 GFF3788 - putative secreted protein, at 285,196 to 286,521 GFF3788 Position (kb) 281 282 283 284 285 286Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 280.843 kb on + strand, within GFF3786at 280.844 kb on - strand, within GFF3786at 280.988 kb on - strand, within GFF3786at 281.060 kb on - strand, within GFF3786at 281.250 kb on + strand, within GFF3786at 281.263 kb on + strand, within GFF3786at 281.264 kb on - strand, within GFF3786at 281.264 kb on - strand, within GFF3786at 281.264 kb on - strand, within GFF3786at 281.414 kb on - strand, within GFF3786at 281.414 kb on - strand, within GFF3786at 281.500 kb on + strand, within GFF3786at 281.500 kb on + strand, within GFF3786at 281.549 kb on - strand, within GFF3786at 281.549 kb on - strand, within GFF3786at 281.734 kb on + strandat 281.734 kb on + strandat 281.734 kb on + strandat 281.734 kb on + strandat 281.734 kb on + strandat 281.735 kb on - strandat 281.735 kb on - strandat 281.735 kb on - strandat 281.735 kb on - strandat 281.735 kb on - strandat 281.735 kb on - strandat 282.012 kb on - strandat 282.431 kb on + strand, within GFF3787at 282.431 kb on + strand, within GFF3787at 282.431 kb on + strand, within GFF3787at 282.431 kb on + strand, within GFF3787at 282.431 kb on + strand, within GFF3787at 282.432 kb on - strand, within GFF3787at 282.432 kb on - strand, within GFF3787at 282.432 kb on - strand, within GFF3787at 282.432 kb on - strand, within GFF3787at 282.970 kb on + strand, within GFF3787at 282.970 kb on + strand, within GFF3787at 282.981 kb on - strand, within GFF3787at 283.478 kb on + strand, within GFF3787at 283.478 kb on + strand, within GFF3787at 283.478 kb on + strand, within GFF3787at 283.479 kb on - strand, within GFF3787at 283.479 kb on - strand, within GFF3787at 283.479 kb on - strand, within GFF3787at 283.883 kb on + strand, within GFF3787at 283.889 kb on + strand, within GFF3787at 283.889 kb on + strand, within GFF3787at 283.889 kb on + strand, within GFF3787at 283.889 kb on + strand, within GFF3787at 283.890 kb on - strand, within GFF3787at 283.890 kb on - strand, within GFF3787at 284.333 kb on + strand, within GFF3787at 284.333 kb on + strand, within GFF3787at 284.333 kb on + strand, within GFF3787at 284.334 kb on - strand, within GFF3787at 284.334 kb on - strand, within GFF3787at 284.334 kb on - strand, within GFF3787at 284.342 kb on + strand, within GFF3787at 284.342 kb on + strand, within GFF3787at 284.342 kb on + strand, within GFF3787at 284.426 kb on + strand, within GFF3787at 284.426 kb on + strand, within GFF3787at 284.427 kb on - strand, within GFF3787at 284.427 kb on - strand, within GFF3787at 285.114 kb on - strandat 285.148 kb on + strandat 285.149 kb on - strandat 285.175 kb on - strandat 285.175 kb on - strandat 285.175 kb on - strandat 285.175 kb on - strandat 285.712 kb on + strand, within GFF3788at 285.712 kb on + strand, within GFF3788at 285.712 kb on + strand, within GFF3788at 285.712 kb on + strand, within GFF3788at 285.712 kb on + strand, within GFF3788at 285.713 kb on - strand, within GFF3788at 285.713 kb on - strand, within GFF3788at 285.745 kb on + strand, within GFF3788at 285.746 kb on - strand, within GFF3788at 285.746 kb on - strand, within GFF3788at 285.746 kb on - strand, within GFF3788at 285.746 kb on - strand, within GFF3788at 285.746 kb on - strand, within GFF3788at 285.940 kb on + strand, within GFF3788

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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280,843 + GFF3786 0.39 -2.1
280,844 - GFF3786 0.39 -0.0
280,988 - GFF3786 0.48 -0.3
281,060 - GFF3786 0.52 -0.2
281,250 + GFF3786 0.64 -2.2
281,263 + GFF3786 0.65 -0.2
281,264 - GFF3786 0.65 -0.2
281,264 - GFF3786 0.65 -1.0
281,264 - GFF3786 0.65 +0.2
281,414 - GFF3786 0.74 -1.2
281,414 - GFF3786 0.74 +0.2
281,500 + GFF3786 0.80 +0.8
281,500 + GFF3786 0.80 -1.9
281,549 - GFF3786 0.83 -1.0
281,549 - GFF3786 0.83 -1.4
281,734 + -3.3
281,734 + -1.4
281,734 + -0.6
281,734 + +1.5
281,734 + +2.1
281,735 - -2.3
281,735 - -0.6
281,735 - +1.5
281,735 - -0.1
281,735 - +0.0
281,735 - -2.0
282,012 - +0.2
282,431 + GFF3787 0.18 -1.7
282,431 + GFF3787 0.18 -1.4
282,431 + GFF3787 0.18 -1.1
282,431 + GFF3787 0.18 -1.4
282,431 + GFF3787 0.18 +0.7
282,432 - GFF3787 0.18 -2.6
282,432 - GFF3787 0.18 +0.5
282,432 - GFF3787 0.18 -2.2
282,432 - GFF3787 0.18 +0.1
282,970 + GFF3787 0.34 -1.0
282,970 + GFF3787 0.34 -1.0
282,981 - GFF3787 0.35 -0.6
283,478 + GFF3787 0.50 +0.8
283,478 + GFF3787 0.50 -1.6
283,478 + GFF3787 0.50 +0.4
283,479 - GFF3787 0.50 -1.7
283,479 - GFF3787 0.50 -0.2
283,479 - GFF3787 0.50 -2.2
283,883 + GFF3787 0.62 -1.7
283,889 + GFF3787 0.62 +1.0
283,889 + GFF3787 0.62 -2.0
283,889 + GFF3787 0.62 -1.6
283,889 + GFF3787 0.62 +0.1
283,890 - GFF3787 0.62 -2.7
283,890 - GFF3787 0.62 +0.9
284,333 + GFF3787 0.76 -0.1
284,333 + GFF3787 0.76 -3.6
284,333 + GFF3787 0.76 -1.1
284,334 - GFF3787 0.76 -2.9
284,334 - GFF3787 0.76 -0.6
284,334 - GFF3787 0.76 +2.4
284,342 + GFF3787 0.76 +0.6
284,342 + GFF3787 0.76 +0.1
284,342 + GFF3787 0.76 -1.0
284,426 + GFF3787 0.79 -2.4
284,426 + GFF3787 0.79 -1.2
284,427 - GFF3787 0.79 -1.9
284,427 - GFF3787 0.79 -0.7
285,114 - +0.7
285,148 + +0.6
285,149 - -0.1
285,175 - -2.6
285,175 - +0.6
285,175 - +1.5
285,175 - +0.0
285,712 + GFF3788 0.39 +1.3
285,712 + GFF3788 0.39 -1.2
285,712 + GFF3788 0.39 -1.0
285,712 + GFF3788 0.39 +0.8
285,712 + GFF3788 0.39 +1.4
285,713 - GFF3788 0.39 +4.0
285,713 - GFF3788 0.39 -1.8
285,745 + GFF3788 0.41 -0.8
285,746 - GFF3788 0.41 +0.9
285,746 - GFF3788 0.41 -1.3
285,746 - GFF3788 0.41 -2.0
285,746 - GFF3788 0.41 -0.5
285,746 - GFF3788 0.41 -1.8
285,940 + GFF3788 0.56 -0.7

Or see this region's nucleotide sequence