Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3433 and GFF3434 are separated by 188 nucleotides GFF3434 and GFF3435 are separated by 1 nucleotides GFF3435 and GFF3436 are separated by 67 nucleotides
GFF3433 - hypothetical protein, at 256,903 to 257,334
GFF3433
GFF3434 - Organic hydroperoxide resistance protein, at 257,523 to 257,936
GFF3434
GFF3435 - predicted integral membrane protein, at 257,938 to 258,396
GFF3435
GFF3436 - Transcriptional regulator, LysR family, at 258,464 to 259,432
GFF3436
Position (kb) 257
258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 256.993 kb on + strand, within GFF3433 at 257.279 kb on - strand, within GFF3433 at 257.279 kb on - strand, within GFF3433 at 257.279 kb on - strand, within GFF3433 at 257.279 kb on - strand, within GFF3433 at 257.333 kb on - strand at 257.370 kb on + strand at 257.370 kb on + strand at 257.371 kb on - strand at 257.371 kb on - strand at 257.371 kb on - strand at 257.399 kb on + strand at 257.399 kb on + strand at 257.399 kb on + strand at 257.399 kb on + strand at 257.399 kb on + strand at 257.399 kb on + strand at 257.399 kb on + strand at 257.399 kb on + strand at 257.400 kb on - strand at 257.400 kb on - strand at 257.442 kb on + strand at 257.442 kb on + strand at 257.457 kb on + strand at 257.457 kb on + strand at 257.458 kb on - strand at 257.458 kb on - strand at 257.544 kb on + strand at 257.544 kb on + strand at 257.545 kb on - strand at 257.793 kb on + strand, within GFF3434 at 257.793 kb on + strand, within GFF3434 at 257.793 kb on + strand, within GFF3434 at 257.794 kb on - strand, within GFF3434 at 257.794 kb on - strand, within GFF3434 at 257.794 kb on - strand, within GFF3434 at 257.886 kb on + strand, within GFF3434 at 257.887 kb on - strand, within GFF3434 at 257.887 kb on - strand, within GFF3434 at 257.887 kb on - strand, within GFF3434 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.099 kb on - strand, within GFF3435 at 258.099 kb on - strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.529 kb on - strand at 258.708 kb on + strand, within GFF3436 at 258.708 kb on + strand, within GFF3436 at 259.119 kb on + strand, within GFF3436 at 259.119 kb on + strand, within GFF3436 at 259.120 kb on - strand, within GFF3436 at 259.221 kb on + strand, within GFF3436 at 259.221 kb on + strand, within GFF3436 at 259.222 kb on - strand, within GFF3436
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 256,993 + GFF3433 0.21 -2.0 257,279 - GFF3433 0.87 +0.1 257,279 - GFF3433 0.87 +0.4 257,279 - GFF3433 0.87 -0.5 257,279 - GFF3433 0.87 -1.4 257,333 - -0.4 257,370 + -0.9 257,370 + +0.6 257,371 - +1.8 257,371 - +0.0 257,371 - -0.3 257,399 + -1.2 257,399 + +2.3 257,399 + +2.0 257,399 + +1.3 257,399 + -0.3 257,399 + +1.3 257,399 + +1.9 257,399 + +0.3 257,400 - -1.9 257,400 - -0.3 257,442 + +2.1 257,442 + -1.8 257,457 + -0.8 257,457 + -1.4 257,458 - -0.2 257,458 - +1.6 257,544 + +2.6 257,544 + -1.0 257,545 - -1.2 257,793 + GFF3434 0.65 -0.8 257,793 + GFF3434 0.65 -1.4 257,793 + GFF3434 0.65 -1.0 257,794 - GFF3434 0.65 +0.6 257,794 - GFF3434 0.65 +1.2 257,794 - GFF3434 0.65 +0.1 257,886 + GFF3434 0.88 +0.4 257,887 - GFF3434 0.88 -2.0 257,887 - GFF3434 0.88 +1.6 257,887 - GFF3434 0.88 -2.6 258,098 + GFF3435 0.35 -1.6 258,098 + GFF3435 0.35 +0.5 258,098 + GFF3435 0.35 +0.4 258,098 + GFF3435 0.35 -2.7 258,098 + GFF3435 0.35 +0.6 258,099 - GFF3435 0.35 +2.1 258,099 - GFF3435 0.35 +0.3 258,104 + GFF3435 0.36 +0.5 258,104 + GFF3435 0.36 +0.1 258,104 + GFF3435 0.36 +1.7 258,104 + GFF3435 0.36 -1.2 258,104 + GFF3435 0.36 +0.4 258,104 + GFF3435 0.36 +0.3 258,104 + GFF3435 0.36 +0.6 258,390 - -2.4 258,390 - +0.6 258,390 - +0.4 258,390 - -1.1 258,390 - +1.4 258,390 - -2.8 258,529 - +0.9 258,708 + GFF3436 0.25 +1.5 258,708 + GFF3436 0.25 +0.4 259,119 + GFF3436 0.68 +1.4 259,119 + GFF3436 0.68 -3.7 259,120 - GFF3436 0.68 -2.3 259,221 + GFF3436 0.78 -2.2 259,221 + GFF3436 0.78 +0.5 259,222 - GFF3436 0.78 -0.9
Or see this region's nucleotide sequence