Strain Fitness in Variovorax sp. SCN45 around GFF3431

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3430 and GFF3431 are separated by 186 nucleotidesGFF3431 and GFF3432 are separated by 121 nucleotides GFF3430 - Transcriptional regulator, LysR family, at 253,241 to 254,143 GFF3430 GFF3431 - Glutaryl-CoA dehydrogenase (EC 1.3.8.6), at 254,330 to 255,529 GFF3431 GFF3432 - L-carnitine dehydratase/bile acid-inducible protein F, at 255,651 to 256,889 GFF3432 Position (kb) 254 255 256Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 253.330 kb on - strandat 253.330 kb on - strandat 253.330 kb on - strandat 253.330 kb on - strandat 253.330 kb on - strandat 253.470 kb on + strand, within GFF3430at 253.470 kb on + strand, within GFF3430at 253.471 kb on - strand, within GFF3430at 253.704 kb on + strand, within GFF3430at 253.704 kb on + strand, within GFF3430at 253.705 kb on - strand, within GFF3430at 253.705 kb on - strand, within GFF3430at 253.938 kb on + strand, within GFF3430at 253.938 kb on + strand, within GFF3430at 253.938 kb on + strand, within GFF3430at 253.938 kb on + strand, within GFF3430at 253.938 kb on + strand, within GFF3430at 254.076 kb on + strandat 254.076 kb on + strandat 254.076 kb on + strandat 254.076 kb on + strandat 254.076 kb on + strandat 254.077 kb on - strandat 254.077 kb on - strandat 254.077 kb on - strandat 254.077 kb on - strandat 254.077 kb on - strandat 254.145 kb on + strandat 254.145 kb on + strandat 254.145 kb on + strandat 254.145 kb on + strandat 254.145 kb on + strandat 254.145 kb on + strandat 254.145 kb on + strandat 254.145 kb on + strandat 254.145 kb on + strandat 254.145 kb on + strandat 254.145 kb on + strandat 254.146 kb on - strandat 254.146 kb on - strandat 254.146 kb on - strandat 254.146 kb on - strandat 254.146 kb on - strandat 254.158 kb on + strandat 254.218 kb on + strandat 254.219 kb on - strandat 254.219 kb on - strandat 254.229 kb on - strandat 254.229 kb on - strandat 254.273 kb on + strandat 254.274 kb on - strandat 254.426 kb on + strandat 254.426 kb on + strandat 254.426 kb on + strandat 254.427 kb on - strandat 254.546 kb on + strand, within GFF3431at 254.546 kb on + strand, within GFF3431at 254.567 kb on + strand, within GFF3431at 254.567 kb on + strand, within GFF3431at 254.567 kb on + strand, within GFF3431at 254.568 kb on - strand, within GFF3431at 254.568 kb on - strand, within GFF3431at 254.568 kb on - strand, within GFF3431at 254.568 kb on - strand, within GFF3431at 254.576 kb on + strand, within GFF3431at 254.577 kb on - strand, within GFF3431at 255.161 kb on + strand, within GFF3431at 255.162 kb on - strand, within GFF3431at 255.162 kb on - strand, within GFF3431at 255.455 kb on + strandat 255.455 kb on + strandat 255.455 kb on + strandat 255.455 kb on + strandat 255.456 kb on - strandat 255.456 kb on - strandat 255.456 kb on - strandat 255.456 kb on - strandat 255.527 kb on + strandat 255.528 kb on - strandat 255.528 kb on - strandat 255.540 kb on + strandat 255.540 kb on + strandat 255.540 kb on + strandat 255.540 kb on + strandat 255.540 kb on + strandat 255.540 kb on + strandat 255.541 kb on - strandat 255.541 kb on - strandat 255.541 kb on - strandat 255.541 kb on - strandat 255.541 kb on - strandat 255.553 kb on + strandat 255.553 kb on + strandat 255.554 kb on - strandat 255.855 kb on + strand, within GFF3432at 255.855 kb on + strand, within GFF3432at 255.855 kb on + strand, within GFF3432at 255.855 kb on + strand, within GFF3432at 255.855 kb on + strand, within GFF3432at 255.856 kb on - strand, within GFF3432at 255.856 kb on - strand, within GFF3432at 255.856 kb on - strand, within GFF3432at 255.856 kb on - strand, within GFF3432at 255.856 kb on - strand, within GFF3432at 255.993 kb on + strand, within GFF3432at 255.993 kb on + strand, within GFF3432at 255.994 kb on - strand, within GFF3432at 255.994 kb on - strand, within GFF3432at 256.041 kb on + strand, within GFF3432at 256.041 kb on + strand, within GFF3432at 256.041 kb on + strand, within GFF3432at 256.041 kb on + strand, within GFF3432at 256.041 kb on + strand, within GFF3432at 256.042 kb on - strand, within GFF3432at 256.042 kb on - strand, within GFF3432at 256.215 kb on + strand, within GFF3432at 256.215 kb on + strand, within GFF3432at 256.216 kb on - strand, within GFF3432at 256.395 kb on + strand, within GFF3432

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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253,330 - +0.1
253,330 - +2.1
253,330 - -0.9
253,330 - +0.5
253,330 - -0.9
253,470 + GFF3430 0.25 +0.5
253,470 + GFF3430 0.25 -0.8
253,471 - GFF3430 0.25 -0.4
253,704 + GFF3430 0.51 +0.1
253,704 + GFF3430 0.51 +0.0
253,705 - GFF3430 0.51 -1.5
253,705 - GFF3430 0.51 -1.2
253,938 + GFF3430 0.77 -0.3
253,938 + GFF3430 0.77 +0.6
253,938 + GFF3430 0.77 +0.3
253,938 + GFF3430 0.77 +0.7
253,938 + GFF3430 0.77 -0.4
254,076 + -0.9
254,076 + -2.6
254,076 + +0.1
254,076 + -1.2
254,076 + -1.0
254,077 - +0.9
254,077 - -2.0
254,077 - -1.3
254,077 - -0.7
254,077 - -2.8
254,145 + +0.1
254,145 + +0.1
254,145 + +0.7
254,145 + +0.1
254,145 + -1.4
254,145 + +1.5
254,145 + +0.0
254,145 + -0.2
254,145 + -0.9
254,145 + -0.4
254,145 + +1.0
254,146 - +0.4
254,146 - +0.8
254,146 - -0.7
254,146 - -0.6
254,146 - +0.5
254,158 + -2.0
254,218 + -0.9
254,219 - +0.9
254,219 - -2.7
254,229 - +0.6
254,229 - +1.0
254,273 + -1.3
254,274 - -0.3
254,426 + -1.3
254,426 + +0.0
254,426 + -1.4
254,427 - -1.4
254,546 + GFF3431 0.18 +1.4
254,546 + GFF3431 0.18 +0.9
254,567 + GFF3431 0.20 -1.4
254,567 + GFF3431 0.20 -0.3
254,567 + GFF3431 0.20 +2.6
254,568 - GFF3431 0.20 -2.4
254,568 - GFF3431 0.20 -2.2
254,568 - GFF3431 0.20 +1.2
254,568 - GFF3431 0.20 -1.4
254,576 + GFF3431 0.20 -1.6
254,577 - GFF3431 0.21 -1.3
255,161 + GFF3431 0.69 -0.6
255,162 - GFF3431 0.69 -0.7
255,162 - GFF3431 0.69 -1.3
255,455 + -1.8
255,455 + +0.1
255,455 + -2.3
255,455 + +0.7
255,456 - -3.1
255,456 - -3.8
255,456 - -4.1
255,456 - -1.0
255,527 + +0.6
255,528 - -0.2
255,528 - -1.6
255,540 + -2.3
255,540 + +2.1
255,540 + +0.9
255,540 + -1.6
255,540 + -0.4
255,540 + -1.4
255,541 - -3.2
255,541 - +0.5
255,541 - -1.7
255,541 - -0.9
255,541 - +3.4
255,553 + +2.1
255,553 + -3.3
255,554 - -1.7
255,855 + GFF3432 0.16 +1.1
255,855 + GFF3432 0.16 +2.6
255,855 + GFF3432 0.16 +0.1
255,855 + GFF3432 0.16 -1.2
255,855 + GFF3432 0.16 -3.5
255,856 - GFF3432 0.17 +2.0
255,856 - GFF3432 0.17 -0.7
255,856 - GFF3432 0.17 -3.3
255,856 - GFF3432 0.17 -2.3
255,856 - GFF3432 0.17 -1.2
255,993 + GFF3432 0.28 -0.8
255,993 + GFF3432 0.28 +1.4
255,994 - GFF3432 0.28 +2.8
255,994 - GFF3432 0.28 -0.1
256,041 + GFF3432 0.31 +0.3
256,041 + GFF3432 0.31 -1.8
256,041 + GFF3432 0.31 -1.5
256,041 + GFF3432 0.31 -1.9
256,041 + GFF3432 0.31 +0.3
256,042 - GFF3432 0.32 -3.3
256,042 - GFF3432 0.32 -3.0
256,215 + GFF3432 0.46 -0.8
256,215 + GFF3432 0.46 +0.0
256,216 - GFF3432 0.46 -1.1
256,395 + GFF3432 0.60 +2.1

Or see this region's nucleotide sequence