Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3412 and GFF3413 overlap by 11 nucleotides GFF3413 and GFF3414 are separated by 212 nucleotides
GFF3412 - Rrf2 family transcriptional regulator, group III, at 236,433 to 236,894
GFF3412
GFF3413 - Thioredoxin reductase (EC 1.8.1.9), at 236,884 to 237,786
GFF3413
GFF3414 - Fumarylacetoacetase (EC 3.7.1.2), at 237,999 to 239,324
GFF3414
Position (kb) 236
237
238 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 235.947 kb on + strand at 235.947 kb on + strand at 235.961 kb on + strand at 235.961 kb on + strand at 235.961 kb on + strand at 235.961 kb on + strand at 235.962 kb on - strand at 235.997 kb on + strand at 235.997 kb on + strand at 235.998 kb on - strand at 236.101 kb on + strand at 236.134 kb on + strand at 236.135 kb on - strand at 236.135 kb on - strand at 236.151 kb on - strand at 236.277 kb on + strand at 236.278 kb on - strand at 236.278 kb on - strand at 236.288 kb on - strand at 236.308 kb on + strand at 236.308 kb on + strand at 236.308 kb on + strand at 236.308 kb on + strand at 236.308 kb on + strand at 236.309 kb on - strand at 236.314 kb on + strand at 236.314 kb on + strand at 236.314 kb on + strand at 236.314 kb on + strand at 236.314 kb on + strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.328 kb on + strand at 236.328 kb on + strand at 236.535 kb on - strand, within GFF3412 at 236.535 kb on - strand, within GFF3412 at 236.890 kb on + strand at 236.890 kb on + strand at 236.891 kb on - strand at 236.891 kb on - strand at 236.891 kb on - strand at 236.891 kb on - strand at 236.891 kb on - strand at 236.891 kb on - strand at 237.208 kb on + strand, within GFF3413 at 237.209 kb on - strand, within GFF3413 at 237.283 kb on + strand, within GFF3413 at 237.283 kb on + strand, within GFF3413 at 237.283 kb on + strand, within GFF3413 at 237.284 kb on - strand, within GFF3413 at 237.295 kb on + strand, within GFF3413 at 237.295 kb on + strand, within GFF3413 at 237.296 kb on - strand, within GFF3413 at 237.680 kb on - strand, within GFF3413 at 237.832 kb on + strand at 237.832 kb on + strand at 237.833 kb on - strand at 237.834 kb on + strand at 237.835 kb on - strand at 237.932 kb on - strand at 238.086 kb on + strand at 238.087 kb on - strand at 238.289 kb on - strand, within GFF3414 at 238.420 kb on + strand, within GFF3414 at 238.420 kb on + strand, within GFF3414 at 238.421 kb on - strand, within GFF3414 at 238.690 kb on + strand, within GFF3414 at 238.690 kb on + strand, within GFF3414 at 238.690 kb on + strand, within GFF3414 at 238.691 kb on - strand, within GFF3414 at 238.691 kb on - strand, within GFF3414 at 238.714 kb on + strand, within GFF3414 at 238.715 kb on - strand, within GFF3414 at 238.715 kb on - strand, within GFF3414 at 238.715 kb on - strand, within GFF3414
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 235,947 + -0.6 235,947 + +3.1 235,961 + -0.2 235,961 + -0.4 235,961 + -1.6 235,961 + -1.6 235,962 - -2.4 235,997 + -0.4 235,997 + +2.6 235,998 - +0.1 236,101 + -1.2 236,134 + +0.6 236,135 - +1.0 236,135 - -0.5 236,151 - -0.2 236,277 + +2.4 236,278 - -0.1 236,278 - -1.7 236,288 - +1.9 236,308 + +0.8 236,308 + +0.1 236,308 + +2.1 236,308 + +1.2 236,308 + -0.6 236,309 - +0.7 236,314 + +1.3 236,314 + +0.6 236,314 + +0.1 236,314 + +0.2 236,314 + +1.7 236,315 - -1.4 236,315 - +0.1 236,315 - -3.4 236,315 - +2.0 236,315 - -1.4 236,315 - -0.8 236,328 + +0.4 236,328 + -1.9 236,535 - GFF3412 0.22 +1.4 236,535 - GFF3412 0.22 +1.2 236,890 + -1.4 236,890 + -1.6 236,891 - +0.4 236,891 - -0.1 236,891 - -0.4 236,891 - -1.6 236,891 - -1.6 236,891 - -1.9 237,208 + GFF3413 0.36 -2.1 237,209 - GFF3413 0.36 +1.0 237,283 + GFF3413 0.44 -1.9 237,283 + GFF3413 0.44 -0.4 237,283 + GFF3413 0.44 +0.4 237,284 - GFF3413 0.44 +0.1 237,295 + GFF3413 0.46 -0.2 237,295 + GFF3413 0.46 +1.0 237,296 - GFF3413 0.46 +1.6 237,680 - GFF3413 0.88 -1.9 237,832 + -1.6 237,832 + -1.0 237,833 - +0.1 237,834 + +2.7 237,835 - -0.4 237,932 - -0.9 238,086 + -0.4 238,087 - -2.2 238,289 - GFF3414 0.22 +1.1 238,420 + GFF3414 0.32 +0.6 238,420 + GFF3414 0.32 +0.6 238,421 - GFF3414 0.32 -1.3 238,690 + GFF3414 0.52 -1.1 238,690 + GFF3414 0.52 +1.3 238,690 + GFF3414 0.52 -1.7 238,691 - GFF3414 0.52 -0.1 238,691 - GFF3414 0.52 +0.8 238,714 + GFF3414 0.54 -0.4 238,715 - GFF3414 0.54 +0.6 238,715 - GFF3414 0.54 -1.3 238,715 - GFF3414 0.54 -4.1
Or see this region's nucleotide sequence