Strain Fitness in Variovorax sp. SCN45 around GFF329

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF327 and GFF328 are separated by 44 nucleotidesGFF328 and GFF329 overlap by 4 nucleotidesGFF329 and GFF330 overlap by 4 nucleotides GFF327 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 361,222 to 362,199 GFF327 GFF328 - hypothetical protein, at 362,244 to 362,939 GFF328 GFF329 - Nucleoside ABC transporter, ATP-binding protein, at 362,936 to 364,537 GFF329 GFF330 - Nucleoside ABC transporter, permease protein 1, at 364,534 to 365,601 GFF330 Position (kb) 362 363 364 365Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 361.975 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 362.050 kb on + strand, within GFF327at 362.051 kb on - strand, within GFF327at 362.051 kb on - strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.069 kb on - strand, within GFF327at 362.069 kb on - strand, within GFF327at 362.069 kb on - strand, within GFF327at 362.227 kb on + strandat 362.228 kb on - strandat 362.320 kb on - strand, within GFF328at 362.343 kb on + strand, within GFF328at 362.344 kb on - strand, within GFF328at 362.732 kb on - strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.795 kb on + strand, within GFF328at 362.889 kb on - strandat 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.099 kb on - strand, within GFF329at 363.099 kb on - strand, within GFF329at 363.099 kb on - strand, within GFF329at 363.099 kb on - strand, within GFF329at 363.405 kb on - strand, within GFF329at 364.242 kb on - strand, within GFF329at 364.313 kb on + strand, within GFF329at 364.313 kb on + strand, within GFF329at 364.313 kb on + strand, within GFF329at 364.313 kb on + strand, within GFF329at 364.313 kb on + strand, within GFF329at 364.313 kb on + strand, within GFF329at 364.314 kb on - strand, within GFF329at 364.314 kb on - strand, within GFF329at 364.314 kb on - strand, within GFF329at 364.314 kb on - strand, within GFF329at 364.314 kb on - strand, within GFF329at 364.314 kb on - strand, within GFF329at 364.314 kb on - strand, within GFF329at 364.314 kb on - strand, within GFF329at 364.314 kb on - strand, within GFF329at 364.666 kb on + strand, within GFF330at 364.666 kb on + strand, within GFF330at 364.667 kb on - strand, within GFF330at 364.667 kb on - strand, within GFF330at 364.813 kb on + strand, within GFF330at 364.813 kb on + strand, within GFF330at 364.813 kb on + strand, within GFF330at 365.194 kb on + strand, within GFF330at 365.194 kb on + strand, within GFF330at 365.195 kb on - strand, within GFF330at 365.195 kb on - strand, within GFF330at 365.353 kb on + strand, within GFF330at 365.353 kb on + strand, within GFF330at 365.353 kb on + strand, within GFF330at 365.353 kb on + strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.386 kb on + strand, within GFF330at 365.386 kb on + strand, within GFF330at 365.386 kb on + strand, within GFF330at 365.512 kb on + strandat 365.512 kb on + strandat 365.512 kb on + strandat 365.512 kb on + strandat 365.512 kb on + strandat 365.512 kb on + strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
361,975 + GFF327 0.77 +0.7
361,984 + GFF327 0.78 +0.2
361,984 + GFF327 0.78 -2.4
361,984 + GFF327 0.78 -0.7
361,984 + GFF327 0.78 +0.9
361,984 + GFF327 0.78 +0.7
361,984 + GFF327 0.78 +0.3
361,985 - GFF327 0.78 -0.4
361,985 - GFF327 0.78 +0.8
361,985 - GFF327 0.78 -0.9
361,990 + GFF327 0.79 -3.8
361,990 + GFF327 0.79 -1.4
361,990 + GFF327 0.79 -2.1
361,990 + GFF327 0.79 +2.0
361,990 + GFF327 0.79 +0.2
361,990 + GFF327 0.79 +0.6
361,990 + GFF327 0.79 +1.3
361,990 + GFF327 0.79 +2.0
361,990 + GFF327 0.79 -1.8
361,990 + GFF327 0.79 -0.7
361,990 + GFF327 0.79 -1.4
361,990 + GFF327 0.79 +2.1
361,990 + GFF327 0.79 -3.2
361,990 + GFF327 0.79 -3.7
361,990 + GFF327 0.79 -1.9
361,991 - GFF327 0.79 +2.0
361,991 - GFF327 0.79 -1.6
361,991 - GFF327 0.79 -1.6
361,991 - GFF327 0.79 +1.4
361,991 - GFF327 0.79 +0.8
361,991 - GFF327 0.79 +1.2
361,991 - GFF327 0.79 +0.2
361,991 - GFF327 0.79 +1.2
361,991 - GFF327 0.79 -0.9
361,991 - GFF327 0.79 -2.1
361,991 - GFF327 0.79 -0.9
362,050 + GFF327 0.85 +0.5
362,051 - GFF327 0.85 +1.5
362,051 - GFF327 0.85 -3.5
362,068 + GFF327 0.87 -2.1
362,068 + GFF327 0.87 -0.2
362,068 + GFF327 0.87 +0.4
362,068 + GFF327 0.87 -1.6
362,068 + GFF327 0.87 -0.0
362,068 + GFF327 0.87 +0.3
362,068 + GFF327 0.87 -1.9
362,069 - GFF327 0.87 -1.6
362,069 - GFF327 0.87 +1.1
362,069 - GFF327 0.87 -1.3
362,227 + -1.3
362,228 - +0.4
362,320 - GFF328 0.11 -3.1
362,343 + GFF328 0.14 -0.9
362,344 - GFF328 0.14 -1.9
362,732 - GFF328 0.70 +0.6
362,748 + GFF328 0.72 -3.5
362,748 + GFF328 0.72 -0.9
362,748 + GFF328 0.72 -1.3
362,748 + GFF328 0.72 -0.1
362,748 + GFF328 0.72 +1.0
362,748 + GFF328 0.72 +1.0
362,748 + GFF328 0.72 -1.2
362,748 + GFF328 0.72 -1.2
362,748 + GFF328 0.72 +0.0
362,748 + GFF328 0.72 +0.8
362,748 + GFF328 0.72 -0.9
362,748 + GFF328 0.72 +1.4
362,749 - GFF328 0.73 +1.7
362,749 - GFF328 0.73 +0.6
362,749 - GFF328 0.73 +0.9
362,749 - GFF328 0.73 -1.0
362,749 - GFF328 0.73 -1.0
362,749 - GFF328 0.73 +0.5
362,749 - GFF328 0.73 -0.5
362,749 - GFF328 0.73 +1.5
362,749 - GFF328 0.73 +0.4
362,795 + GFF328 0.79 -1.3
362,889 - -1.8
363,098 + GFF329 0.10 +2.6
363,098 + GFF329 0.10 +0.6
363,098 + GFF329 0.10 +2.3
363,098 + GFF329 0.10 -0.2
363,098 + GFF329 0.10 +0.5
363,098 + GFF329 0.10 -1.2
363,099 - GFF329 0.10 +1.1
363,099 - GFF329 0.10 -0.1
363,099 - GFF329 0.10 -1.8
363,099 - GFF329 0.10 +0.8
363,405 - GFF329 0.29 -1.2
364,242 - GFF329 0.82 +0.6
364,313 + GFF329 0.86 -2.2
364,313 + GFF329 0.86 -0.1
364,313 + GFF329 0.86 -0.2
364,313 + GFF329 0.86 -0.1
364,313 + GFF329 0.86 -0.3
364,313 + GFF329 0.86 -0.8
364,314 - GFF329 0.86 -0.6
364,314 - GFF329 0.86 -1.6
364,314 - GFF329 0.86 -0.6
364,314 - GFF329 0.86 +1.6
364,314 - GFF329 0.86 -3.1
364,314 - GFF329 0.86 +0.9
364,314 - GFF329 0.86 -2.1
364,314 - GFF329 0.86 -1.6
364,314 - GFF329 0.86 +1.0
364,666 + GFF330 0.12 -0.4
364,666 + GFF330 0.12 -2.6
364,667 - GFF330 0.12 -0.6
364,667 - GFF330 0.12 -2.6
364,813 + GFF330 0.26 -0.0
364,813 + GFF330 0.26 -2.4
364,813 + GFF330 0.26 +1.3
365,194 + GFF330 0.62 -3.0
365,194 + GFF330 0.62 -0.9
365,195 - GFF330 0.62 -0.4
365,195 - GFF330 0.62 +1.6
365,353 + GFF330 0.77 -1.2
365,353 + GFF330 0.77 -2.7
365,353 + GFF330 0.77 +0.2
365,353 + GFF330 0.77 -0.9
365,354 - GFF330 0.77 +0.1
365,354 - GFF330 0.77 -0.6
365,354 - GFF330 0.77 +2.3
365,354 - GFF330 0.77 +1.5
365,354 - GFF330 0.77 -1.7
365,354 - GFF330 0.77 +1.8
365,354 - GFF330 0.77 -0.9
365,354 - GFF330 0.77 +0.7
365,354 - GFF330 0.77 -2.1
365,354 - GFF330 0.77 -4.0
365,386 + GFF330 0.80 -3.9
365,386 + GFF330 0.80 -1.5
365,386 + GFF330 0.80 -1.8
365,512 + -1.4
365,512 + -0.0
365,512 + -0.2
365,512 + +1.1
365,512 + +0.8
365,512 + +0.3
365,513 - -0.0
365,513 - -2.4
365,513 - -0.9
365,513 - +0.0
365,513 - +0.2
365,513 - +0.3
365,513 - +1.2
365,513 - +0.5

Or see this region's nucleotide sequence