Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3243 and GFF3244 are separated by 10 nucleotides GFF3244 and GFF3245 overlap by 4 nucleotides GFF3245 and GFF3246 are separated by 57 nucleotides
GFF3243 - Flavin containing amine oxidoreductase, at 57,220 to 58,851
GFF3243
GFF3244 - Spermidine synthase N-terminal extension / Spermidine synthase (EC 2.5.1.16), at 58,862 to 60,505
GFF3244
GFF3245 - hypothetical protein, at 60,502 to 60,720
GFF3245
GFF3246 - hypothetical protein, at 60,778 to 62,268
GFF3246
Position (kb) 58
59
60
61 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 58.068 kb on - strand, within GFF3243 at 58.068 kb on - strand, within GFF3243 at 58.068 kb on - strand, within GFF3243 at 58.101 kb on + strand, within GFF3243 at 58.113 kb on - strand, within GFF3243 at 58.131 kb on - strand, within GFF3243 at 58.131 kb on - strand, within GFF3243 at 58.139 kb on + strand, within GFF3243 at 58.139 kb on + strand, within GFF3243 at 58.242 kb on + strand, within GFF3243 at 58.242 kb on + strand, within GFF3243 at 58.242 kb on + strand, within GFF3243 at 58.243 kb on - strand, within GFF3243 at 58.243 kb on - strand, within GFF3243 at 58.282 kb on - strand, within GFF3243 at 58.301 kb on + strand, within GFF3243 at 58.412 kb on + strand, within GFF3243 at 58.413 kb on - strand, within GFF3243 at 58.503 kb on - strand, within GFF3243 at 58.896 kb on + strand at 58.897 kb on - strand at 58.944 kb on - strand at 59.061 kb on + strand, within GFF3244 at 59.061 kb on + strand, within GFF3244 at 59.061 kb on + strand, within GFF3244 at 59.061 kb on + strand, within GFF3244 at 59.062 kb on - strand, within GFF3244 at 59.062 kb on - strand, within GFF3244 at 59.062 kb on - strand, within GFF3244 at 59.062 kb on - strand, within GFF3244 at 59.097 kb on + strand, within GFF3244 at 59.098 kb on - strand, within GFF3244 at 59.194 kb on - strand, within GFF3244 at 59.244 kb on + strand, within GFF3244 at 59.245 kb on - strand, within GFF3244 at 59.245 kb on - strand, within GFF3244 at 59.245 kb on - strand, within GFF3244 at 59.301 kb on + strand, within GFF3244 at 59.301 kb on + strand, within GFF3244 at 59.302 kb on - strand, within GFF3244 at 59.556 kb on + strand, within GFF3244 at 59.556 kb on + strand, within GFF3244 at 59.556 kb on + strand, within GFF3244 at 59.556 kb on + strand, within GFF3244 at 59.557 kb on - strand, within GFF3244 at 59.557 kb on - strand, within GFF3244 at 59.662 kb on - strand, within GFF3244 at 59.752 kb on - strand, within GFF3244 at 59.787 kb on + strand, within GFF3244 at 59.788 kb on - strand, within GFF3244 at 59.788 kb on - strand, within GFF3244 at 60.033 kb on + strand, within GFF3244 at 60.033 kb on + strand, within GFF3244 at 60.033 kb on + strand, within GFF3244 at 60.034 kb on - strand, within GFF3244 at 60.180 kb on + strand, within GFF3244 at 60.181 kb on - strand, within GFF3244 at 60.280 kb on - strand, within GFF3244 at 60.318 kb on + strand, within GFF3244 at 60.318 kb on + strand, within GFF3244 at 60.319 kb on - strand, within GFF3244 at 60.319 kb on - strand, within GFF3244 at 60.319 kb on - strand, within GFF3244 at 60.319 kb on - strand, within GFF3244 at 60.319 kb on - strand, within GFF3244 at 60.366 kb on + strand at 60.366 kb on + strand at 60.366 kb on + strand at 60.367 kb on - strand at 60.367 kb on - strand at 60.396 kb on + strand at 60.397 kb on - strand at 60.608 kb on + strand, within GFF3245 at 60.609 kb on - strand, within GFF3245 at 60.609 kb on - strand, within GFF3245 at 60.609 kb on - strand, within GFF3245 at 60.609 kb on - strand, within GFF3245 at 60.609 kb on - strand, within GFF3245 at 60.671 kb on + strand, within GFF3245 at 60.671 kb on + strand, within GFF3245 at 60.672 kb on - strand, within GFF3245 at 60.736 kb on + strand at 60.736 kb on + strand at 60.736 kb on + strand at 60.736 kb on + strand at 60.737 kb on - strand at 60.737 kb on - strand at 60.737 kb on - strand at 60.739 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.803 kb on + strand at 60.804 kb on - strand at 61.100 kb on + strand, within GFF3246 at 61.100 kb on + strand, within GFF3246 at 61.101 kb on - strand, within GFF3246 at 61.142 kb on + strand, within GFF3246 at 61.143 kb on - strand, within GFF3246 at 61.143 kb on - strand, within GFF3246 at 61.143 kb on - strand, within GFF3246 at 61.160 kb on + strand, within GFF3246 at 61.160 kb on + strand, within GFF3246 at 61.160 kb on + strand, within GFF3246 at 61.178 kb on + strand, within GFF3246 at 61.179 kb on - strand, within GFF3246 at 61.179 kb on - strand, within GFF3246 at 61.179 kb on - strand, within GFF3246 at 61.179 kb on - strand, within GFF3246 at 61.184 kb on + strand, within GFF3246 at 61.184 kb on + strand, within GFF3246 at 61.184 kb on + strand, within GFF3246 at 61.184 kb on + strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.212 kb on - strand, within GFF3246 at 61.322 kb on + strand, within GFF3246 at 61.322 kb on + strand, within GFF3246 at 61.322 kb on + strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.331 kb on + strand, within GFF3246 at 61.332 kb on - strand, within GFF3246 at 61.332 kb on - strand, within GFF3246 at 61.332 kb on - strand, within GFF3246
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 58,068 - GFF3243 0.52 +2.1 58,068 - GFF3243 0.52 -0.4 58,068 - GFF3243 0.52 -0.7 58,101 + GFF3243 0.54 -0.2 58,113 - GFF3243 0.55 -1.3 58,131 - GFF3243 0.56 -0.0 58,131 - GFF3243 0.56 -0.2 58,139 + GFF3243 0.56 -2.2 58,139 + GFF3243 0.56 -1.9 58,242 + GFF3243 0.63 -0.4 58,242 + GFF3243 0.63 -1.4 58,242 + GFF3243 0.63 -0.4 58,243 - GFF3243 0.63 +1.0 58,243 - GFF3243 0.63 -2.0 58,282 - GFF3243 0.65 -1.7 58,301 + GFF3243 0.66 -1.6 58,412 + GFF3243 0.73 +0.1 58,413 - GFF3243 0.73 -0.9 58,503 - GFF3243 0.79 +0.4 58,896 + -2.0 58,897 - +0.3 58,944 - -1.9 59,061 + GFF3244 0.12 +1.6 59,061 + GFF3244 0.12 +0.4 59,061 + GFF3244 0.12 -3.1 59,061 + GFF3244 0.12 -1.7 59,062 - GFF3244 0.12 -0.2 59,062 - GFF3244 0.12 -0.4 59,062 - GFF3244 0.12 -0.9 59,062 - GFF3244 0.12 +1.1 59,097 + GFF3244 0.14 +1.3 59,098 - GFF3244 0.14 +0.7 59,194 - GFF3244 0.20 -0.8 59,244 + GFF3244 0.23 +1.7 59,245 - GFF3244 0.23 -1.0 59,245 - GFF3244 0.23 +0.6 59,245 - GFF3244 0.23 -0.4 59,301 + GFF3244 0.27 +0.1 59,301 + GFF3244 0.27 -0.4 59,302 - GFF3244 0.27 -0.7 59,556 + GFF3244 0.42 +0.2 59,556 + GFF3244 0.42 -0.7 59,556 + GFF3244 0.42 -2.6 59,556 + GFF3244 0.42 +0.2 59,557 - GFF3244 0.42 -0.9 59,557 - GFF3244 0.42 +1.6 59,662 - GFF3244 0.49 -0.8 59,752 - GFF3244 0.54 +0.7 59,787 + GFF3244 0.56 -0.6 59,788 - GFF3244 0.56 +1.7 59,788 - GFF3244 0.56 +0.1 60,033 + GFF3244 0.71 -0.1 60,033 + GFF3244 0.71 -0.4 60,033 + GFF3244 0.71 -0.4 60,034 - GFF3244 0.71 -1.8 60,180 + GFF3244 0.80 -3.7 60,181 - GFF3244 0.80 -0.4 60,280 - GFF3244 0.86 -0.8 60,318 + GFF3244 0.89 -2.8 60,318 + GFF3244 0.89 -1.0 60,319 - GFF3244 0.89 +1.3 60,319 - GFF3244 0.89 +0.9 60,319 - GFF3244 0.89 -2.4 60,319 - GFF3244 0.89 -1.6 60,319 - GFF3244 0.89 +2.0 60,366 + -0.4 60,366 + -0.4 60,366 + -1.7 60,367 - +1.2 60,367 - +0.6 60,396 + -2.5 60,397 - -0.4 60,608 + GFF3245 0.48 -1.1 60,609 - GFF3245 0.49 -1.3 60,609 - GFF3245 0.49 -1.6 60,609 - GFF3245 0.49 -0.9 60,609 - GFF3245 0.49 +1.0 60,609 - GFF3245 0.49 +1.0 60,671 + GFF3245 0.77 -0.5 60,671 + GFF3245 0.77 -0.9 60,672 - GFF3245 0.78 -1.3 60,736 + -1.9 60,736 + +1.1 60,736 + +0.6 60,736 + -0.2 60,737 - -0.4 60,737 - +0.6 60,737 - -1.5 60,739 + -0.7 60,747 + -0.3 60,747 + -0.7 60,747 + -0.5 60,747 + -1.3 60,747 + -1.3 60,747 + -2.1 60,747 + +2.5 60,747 + -4.4 60,747 + -0.1 60,747 + -2.6 60,748 - +0.6 60,748 - -3.1 60,748 - -0.2 60,748 - -0.7 60,748 - -0.5 60,748 - +0.2 60,748 - +0.2 60,748 - +0.6 60,748 - -2.8 60,803 + +0.8 60,804 - +0.2 61,100 + GFF3246 0.22 -0.6 61,100 + GFF3246 0.22 +0.4 61,101 - GFF3246 0.22 +0.6 61,142 + GFF3246 0.24 +1.0 61,143 - GFF3246 0.24 -2.1 61,143 - GFF3246 0.24 +1.9 61,143 - GFF3246 0.24 -0.5 61,160 + GFF3246 0.26 -0.2 61,160 + GFF3246 0.26 -0.2 61,160 + GFF3246 0.26 +0.1 61,178 + GFF3246 0.27 -2.9 61,179 - GFF3246 0.27 +0.3 61,179 - GFF3246 0.27 +0.9 61,179 - GFF3246 0.27 -0.6 61,179 - GFF3246 0.27 -0.2 61,184 + GFF3246 0.27 +1.4 61,184 + GFF3246 0.27 +1.0 61,184 + GFF3246 0.27 +2.1 61,184 + GFF3246 0.27 +0.6 61,185 - GFF3246 0.27 -0.3 61,185 - GFF3246 0.27 -1.9 61,185 - GFF3246 0.27 -1.9 61,185 - GFF3246 0.27 -0.2 61,185 - GFF3246 0.27 -0.7 61,185 - GFF3246 0.27 +0.9 61,211 + GFF3246 0.29 +0.1 61,211 + GFF3246 0.29 -1.4 61,211 + GFF3246 0.29 +0.5 61,211 + GFF3246 0.29 +0.6 61,211 + GFF3246 0.29 -0.7 61,211 + GFF3246 0.29 -4.2 61,212 - GFF3246 0.29 -1.3 61,322 + GFF3246 0.36 -2.8 61,322 + GFF3246 0.36 -1.3 61,322 + GFF3246 0.36 -0.5 61,323 - GFF3246 0.37 -1.4 61,323 - GFF3246 0.37 -0.2 61,323 - GFF3246 0.37 -0.1 61,323 - GFF3246 0.37 +1.2 61,323 - GFF3246 0.37 +0.5 61,323 - GFF3246 0.37 -0.0 61,331 + GFF3246 0.37 -2.7 61,332 - GFF3246 0.37 -0.4 61,332 - GFF3246 0.37 -2.3 61,332 - GFF3246 0.37 -1.6
Or see this region's nucleotide sequence