Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3233 and GFF3234 are separated by 1 nucleotides GFF3234 and GFF3235 are separated by 55 nucleotides GFF3235 and GFF3236 overlap by 1 nucleotides GFF3236 and GFF3237 overlap by 4 nucleotides GFF3237 and GFF3238 overlap by 4 nucleotides
GFF3233 - hypothetical protein, at 51,875 to 52,627
GFF3233
GFF3234 - no description, at 52,629 to 52,748
GFF3234
GFF3235 - no description, at 52,804 to 53,175
GFF3235
GFF3236 - no description, at 53,175 to 53,573
GFF3236
GFF3237 - no description, at 53,570 to 53,809
GFF3237
GFF3238 - no description, at 53,806 to 54,216
GFF3238
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 52.789 kb on - strand at 52.821 kb on - strand at 52.949 kb on - strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.115 kb on + strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.116 kb on - strand, within GFF3235 at 53.203 kb on + strand at 53.203 kb on + strand at 53.204 kb on - strand at 53.204 kb on - strand at 53.514 kb on + strand, within GFF3236 at 53.591 kb on + strand at 53.591 kb on + strand at 53.591 kb on + strand at 53.591 kb on + strand at 53.591 kb on + strand at 53.592 kb on - strand at 53.592 kb on - strand at 53.592 kb on - strand at 53.592 kb on - strand at 53.592 kb on - strand at 53.717 kb on + strand, within GFF3237 at 53.958 kb on + strand, within GFF3238 at 53.959 kb on - strand, within GFF3238 at 54.109 kb on + strand, within GFF3238 at 54.109 kb on + strand, within GFF3238 at 54.109 kb on + strand, within GFF3238 at 54.109 kb on + strand, within GFF3238 at 54.110 kb on - strand, within GFF3238 at 54.110 kb on - strand, within GFF3238
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 52,789 - -0.4 52,821 - -1.7 52,949 - GFF3235 0.39 -0.2 53,115 + GFF3235 0.84 -1.5 53,115 + GFF3235 0.84 +0.2 53,115 + GFF3235 0.84 -0.7 53,115 + GFF3235 0.84 -0.6 53,115 + GFF3235 0.84 +0.8 53,115 + GFF3235 0.84 -3.3 53,116 - GFF3235 0.84 +0.2 53,116 - GFF3235 0.84 -1.6 53,116 - GFF3235 0.84 -0.7 53,116 - GFF3235 0.84 -2.0 53,116 - GFF3235 0.84 -2.1 53,116 - GFF3235 0.84 -0.1 53,116 - GFF3235 0.84 +0.6 53,203 + -0.5 53,203 + +1.5 53,204 - +2.1 53,204 - -0.4 53,514 + GFF3236 0.85 -1.9 53,591 + -2.4 53,591 + -1.0 53,591 + +0.1 53,591 + -0.1 53,591 + -0.9 53,592 - +0.1 53,592 - +0.8 53,592 - -0.4 53,592 - +1.3 53,592 - +2.2 53,717 + GFF3237 0.61 -2.3 53,958 + GFF3238 0.37 -0.4 53,959 - GFF3238 0.37 -1.9 54,109 + GFF3238 0.74 +0.2 54,109 + GFF3238 0.74 -1.5 54,109 + GFF3238 0.74 -0.9 54,109 + GFF3238 0.74 +1.3 54,110 - GFF3238 0.74 +2.3 54,110 - GFF3238 0.74 -0.2
Or see this region's nucleotide sequence