Strain Fitness in Variovorax sp. SCN45 around GFF3207

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3207 and GFF3208 overlap by 4 nucleotides GFF3207 - hypothetical protein, at 25,551 to 26,420 GFF3207 GFF3208 - Transposon Tn7 transposition protein tnsB, at 26,417 to 28,687 GFF3208 Position (kb) 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 24.567 kb on - strandat 24.567 kb on - strandat 24.601 kb on - strandat 24.632 kb on - strandat 24.755 kb on + strandat 24.756 kb on - strandat 24.756 kb on - strandat 24.756 kb on - strandat 24.875 kb on + strandat 24.875 kb on + strandat 24.876 kb on - strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.970 kb on + strandat 24.971 kb on - strandat 24.971 kb on - strandat 24.971 kb on - strandat 24.971 kb on - strandat 24.971 kb on - strandat 24.997 kb on + strandat 24.997 kb on + strandat 25.015 kb on - strandat 25.139 kb on + strandat 25.146 kb on + strandat 25.146 kb on + strandat 25.146 kb on + strandat 25.147 kb on - strandat 25.147 kb on - strandat 25.150 kb on + strandat 25.150 kb on + strandat 25.163 kb on - strandat 25.195 kb on + strandat 25.195 kb on + strandat 25.195 kb on + strandat 25.287 kb on - strandat 25.287 kb on - strandat 25.287 kb on - strandat 25.290 kb on + strandat 25.290 kb on + strandat 25.290 kb on + strandat 25.290 kb on + strandat 25.291 kb on - strandat 25.291 kb on - strandat 25.291 kb on - strandat 25.291 kb on - strandat 25.556 kb on + strandat 25.636 kb on - strandat 25.639 kb on + strand, within GFF3207at 25.640 kb on - strand, within GFF3207at 25.710 kb on - strand, within GFF3207at 25.710 kb on - strand, within GFF3207at 25.723 kb on + strand, within GFF3207at 25.723 kb on + strand, within GFF3207at 25.724 kb on - strand, within GFF3207at 25.724 kb on - strand, within GFF3207at 25.747 kb on + strand, within GFF3207at 25.773 kb on + strand, within GFF3207at 25.952 kb on + strand, within GFF3207at 25.953 kb on - strand, within GFF3207at 25.953 kb on - strand, within GFF3207at 25.953 kb on - strand, within GFF3207at 25.953 kb on - strand, within GFF3207at 26.098 kb on - strand, within GFF3207at 26.142 kb on + strand, within GFF3207at 26.142 kb on + strand, within GFF3207at 26.142 kb on + strand, within GFF3207at 26.143 kb on - strand, within GFF3207at 26.568 kb on + strandat 26.568 kb on + strandat 26.569 kb on - strandat 26.569 kb on - strandat 26.569 kb on - strandat 26.753 kb on - strand, within GFF3208at 26.843 kb on - strand, within GFF3208at 26.864 kb on + strand, within GFF3208at 26.865 kb on - strand, within GFF3208at 26.883 kb on - strand, within GFF3208at 26.918 kb on + strand, within GFF3208at 26.997 kb on + strand, within GFF3208at 26.997 kb on + strand, within GFF3208at 26.997 kb on + strand, within GFF3208at 26.997 kb on + strand, within GFF3208at 26.998 kb on - strand, within GFF3208at 26.998 kb on - strand, within GFF3208at 26.998 kb on - strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 27.000 kb on - strand, within GFF3208at 27.000 kb on - strand, within GFF3208at 27.000 kb on - strand, within GFF3208at 27.000 kb on - strand, within GFF3208at 27.000 kb on - strand, within GFF3208at 27.088 kb on + strand, within GFF3208at 27.105 kb on - strand, within GFF3208at 27.217 kb on - strand, within GFF3208at 27.270 kb on - strand, within GFF3208at 27.378 kb on + strand, within GFF3208at 27.378 kb on + strand, within GFF3208at 27.379 kb on - strand, within GFF3208at 27.379 kb on - strand, within GFF3208at 27.398 kb on + strand, within GFF3208

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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24,567 - -0.2
24,567 - +1.9
24,601 - +0.5
24,632 - -1.4
24,755 + -0.4
24,756 - +0.2
24,756 - -3.0
24,756 - +0.4
24,875 + -3.4
24,875 + +2.1
24,876 - -2.0
24,970 + -2.4
24,970 + -2.7
24,970 + +0.9
24,970 + +0.6
24,970 + -3.7
24,970 + -0.3
24,970 + -2.6
24,970 + +1.2
24,970 + -1.6
24,970 + +0.7
24,970 + +0.4
24,970 + -0.4
24,970 + +0.0
24,970 + +0.6
24,970 + +0.4
24,970 + -1.5
24,970 + -0.2
24,970 + -1.0
24,970 + +1.1
24,971 - +3.5
24,971 - -0.8
24,971 - -1.2
24,971 - -1.8
24,971 - +0.5
24,997 + -0.9
24,997 + +2.1
25,015 - -0.9
25,139 + +0.1
25,146 + -2.3
25,146 + +0.2
25,146 + -1.3
25,147 - -0.3
25,147 - -2.4
25,150 + -0.2
25,150 + -2.7
25,163 - -0.3
25,195 + -3.4
25,195 + +0.3
25,195 + +0.8
25,287 - +1.1
25,287 - -0.8
25,287 - -1.2
25,290 + -1.3
25,290 + +0.8
25,290 + -3.0
25,290 + -1.2
25,291 - -1.7
25,291 - -1.7
25,291 - -2.8
25,291 - -0.7
25,556 + +0.1
25,636 - -1.2
25,639 + GFF3207 0.10 -1.8
25,640 - GFF3207 0.10 +0.2
25,710 - GFF3207 0.18 +1.0
25,710 - GFF3207 0.18 -1.7
25,723 + GFF3207 0.20 +0.2
25,723 + GFF3207 0.20 -1.5
25,724 - GFF3207 0.20 +0.5
25,724 - GFF3207 0.20 +1.4
25,747 + GFF3207 0.23 -0.4
25,773 + GFF3207 0.26 -2.4
25,952 + GFF3207 0.46 -0.0
25,953 - GFF3207 0.46 -0.2
25,953 - GFF3207 0.46 -1.8
25,953 - GFF3207 0.46 -0.8
25,953 - GFF3207 0.46 -0.0
26,098 - GFF3207 0.63 +1.6
26,142 + GFF3207 0.68 -0.3
26,142 + GFF3207 0.68 +0.8
26,142 + GFF3207 0.68 -1.3
26,143 - GFF3207 0.68 +1.6
26,568 + +0.1
26,568 + +0.6
26,569 - -0.3
26,569 - -2.3
26,569 - -3.2
26,753 - GFF3208 0.15 -1.4
26,843 - GFF3208 0.19 +0.7
26,864 + GFF3208 0.20 -1.3
26,865 - GFF3208 0.20 +0.4
26,883 - GFF3208 0.21 +1.2
26,918 + GFF3208 0.22 -0.2
26,997 + GFF3208 0.26 -0.9
26,997 + GFF3208 0.26 +0.2
26,997 + GFF3208 0.26 +0.4
26,997 + GFF3208 0.26 +1.6
26,998 - GFF3208 0.26 +0.1
26,998 - GFF3208 0.26 -2.8
26,998 - GFF3208 0.26 -2.8
26,999 + GFF3208 0.26 -0.7
26,999 + GFF3208 0.26 -1.7
26,999 + GFF3208 0.26 +0.6
26,999 + GFF3208 0.26 -2.6
26,999 + GFF3208 0.26 -3.0
26,999 + GFF3208 0.26 -1.0
27,000 - GFF3208 0.26 -0.5
27,000 - GFF3208 0.26 +0.1
27,000 - GFF3208 0.26 -1.9
27,000 - GFF3208 0.26 +0.2
27,000 - GFF3208 0.26 +0.8
27,088 + GFF3208 0.30 -0.0
27,105 - GFF3208 0.30 +0.6
27,217 - GFF3208 0.35 -1.5
27,270 - GFF3208 0.38 +1.1
27,378 + GFF3208 0.42 +0.8
27,378 + GFF3208 0.42 -1.7
27,379 - GFF3208 0.42 -0.8
27,379 - GFF3208 0.42 +0.4
27,398 + GFF3208 0.43 +0.6

Or see this region's nucleotide sequence