Strain Fitness in Variovorax sp. SCN45 around GFF3204

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
22,207	+				+1.0
22,208	-				-1.3
22,208	-				+0.4
22,227	+				+0.9
22,351	-				-0.2
22,351	-				+1.5
22,387	-				+0.5
22,405	+				+0.8
22,405	+				+0.1
22,406	-				-0.4
22,406	-				+0.3
22,406	-				-1.0
22,446	+				+0.4
22,446	+				-1.9
22,597	+		GFF3203	0.18	-0.5
22,597	+		GFF3203	0.18	+0.4
22,597	+		GFF3203	0.18	-0.2
22,598	-		GFF3203	0.18	-0.3
22,635	-		GFF3203	0.24	-1.6
22,705	+		GFF3203	0.35	-0.9
22,759	+		GFF3203	0.43	-1.0
22,760	-		GFF3203	0.43	-1.3
22,760	-		GFF3203	0.43	-0.4
22,820	+		GFF3203	0.52	-2.9
23,015	+		GFF3203	0.83	+0.4
23,081	-				-1.4
23,110	+				-0.2
23,111	-				+0.2
23,126	-				-0.7
23,126	-				-0.2
23,126	-				+0.6
23,182	+				+1.4
23,183	-				+1.9
23,255	+		GFF3204	0.20	+3.7
23,255	+		GFF3204	0.20	-1.0
23,350	+		GFF3204	0.54	-2.4
23,350	+		GFF3204	0.54	+0.6
23,351	-		GFF3204	0.54	-0.2
23,351	-		GFF3204	0.54	-1.9
23,640	+		GFF3205	0.12	+1.1
23,641	-		GFF3205	0.13	+0.7
23,641	-		GFF3205	0.13	-0.7
23,719	-		GFF3205	0.48	-0.2
23,781	-		GFF3205	0.77	+0.8
23,787	+		GFF3205	0.79	-0.4
23,883	+				+0.5
23,883	+				+0.2
23,884	-				-1.0
23,884	-				+0.7
23,888	-				+2.4
23,888	-				-1.2
24,119	+		GFF3206	0.59	-1.0
24,119	+		GFF3206	0.59	-0.6