Strain Fitness in Variovorax sp. SCN45 around GFF2972

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2971 and GFF2972 overlap by 50 nucleotidesGFF2972 and GFF2973 are separated by 119 nucleotidesGFF2973 and GFF2974 are separated by 62 nucleotides GFF2971 - Transcriptional regulator, LysR family, at 403,325 to 404,290 GFF2971 GFF2972 - Radical SAM domain protein, at 404,241 to 405,335 GFF2972 GFF2973 - Transcriptional regulator, at 405,455 to 406,033 GFF2973 GFF2974 - Cell division inhibitor, at 406,096 to 406,518 GFF2974 Position (kb) 404 405 406Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 403.262 kb on + strandat 403.263 kb on - strandat 403.263 kb on - strandat 403.263 kb on - strandat 403.274 kb on + strandat 403.276 kb on + strandat 403.289 kb on - strandat 403.312 kb on - strandat 403.312 kb on - strandat 403.402 kb on + strandat 403.402 kb on + strandat 403.403 kb on - strandat 403.403 kb on - strandat 403.403 kb on - strandat 403.582 kb on - strand, within GFF2971at 404.053 kb on - strand, within GFF2971at 404.072 kb on + strand, within GFF2971at 404.073 kb on - strand, within GFF2971at 404.138 kb on - strand, within GFF2971at 404.150 kb on + strand, within GFF2971at 404.242 kb on + strandat 404.242 kb on + strandat 404.242 kb on + strandat 404.242 kb on + strandat 404.242 kb on + strandat 404.243 kb on - strandat 404.243 kb on - strandat 404.243 kb on - strandat 404.243 kb on - strandat 404.243 kb on - strandat 404.410 kb on + strand, within GFF2972at 404.410 kb on + strand, within GFF2972at 404.411 kb on - strand, within GFF2972at 404.411 kb on - strand, within GFF2972at 404.411 kb on - strand, within GFF2972at 404.470 kb on + strand, within GFF2972at 404.533 kb on + strand, within GFF2972at 404.533 kb on + strand, within GFF2972at 404.533 kb on + strand, within GFF2972at 404.533 kb on + strand, within GFF2972at 404.534 kb on - strand, within GFF2972at 404.534 kb on - strand, within GFF2972at 404.534 kb on - strand, within GFF2972at 404.534 kb on - strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.899 kb on + strand, within GFF2972at 404.900 kb on - strand, within GFF2972at 404.900 kb on - strand, within GFF2972at 404.900 kb on - strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.930 kb on - strand, within GFF2972at 404.930 kb on - strand, within GFF2972at 404.930 kb on - strand, within GFF2972at 404.930 kb on - strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 405.037 kb on + strand, within GFF2972at 405.037 kb on + strand, within GFF2972at 405.037 kb on + strand, within GFF2972at 405.037 kb on + strand, within GFF2972at 405.037 kb on + strand, within GFF2972at 405.038 kb on - strand, within GFF2972at 405.038 kb on - strand, within GFF2972at 405.038 kb on - strand, within GFF2972at 405.038 kb on - strand, within GFF2972at 405.038 kb on - strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.065 kb on - strand, within GFF2972at 405.065 kb on - strand, within GFF2972at 405.065 kb on - strand, within GFF2972at 405.065 kb on - strand, within GFF2972at 405.115 kb on + strand, within GFF2972at 405.115 kb on + strand, within GFF2972at 405.115 kb on + strand, within GFF2972at 405.116 kb on - strand, within GFF2972at 405.116 kb on - strand, within GFF2972at 405.116 kb on - strand, within GFF2972at 405.116 kb on - strand, within GFF2972at 405.358 kb on - strandat 405.365 kb on - strandat 405.375 kb on + strandat 405.698 kb on + strand, within GFF2973at 406.136 kb on - strandat 406.136 kb on - strandat 406.136 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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403,262 + -1.1
403,263 - -1.2
403,263 - -2.6
403,263 - -0.3
403,274 + -0.7
403,276 + +0.9
403,289 - -0.7
403,312 - -1.4
403,312 - +0.4
403,402 + -1.0
403,402 + -0.4
403,403 - -0.9
403,403 - +1.1
403,403 - +0.3
403,582 - GFF2971 0.27 -0.3
404,053 - GFF2971 0.75 -1.8
404,072 + GFF2971 0.77 -1.1
404,073 - GFF2971 0.77 -2.9
404,138 - GFF2971 0.84 -1.1
404,150 + GFF2971 0.85 -1.8
404,242 + -0.2
404,242 + -0.5
404,242 + -0.8
404,242 + -0.5
404,242 + +1.7
404,243 - +0.0
404,243 - -0.9
404,243 - +0.3
404,243 - +0.2
404,243 - +0.3
404,410 + GFF2972 0.15 +0.9
404,410 + GFF2972 0.15 -0.7
404,411 - GFF2972 0.16 +0.1
404,411 - GFF2972 0.16 -0.6
404,411 - GFF2972 0.16 +0.7
404,470 + GFF2972 0.21 -1.1
404,533 + GFF2972 0.27 -1.5
404,533 + GFF2972 0.27 -1.9
404,533 + GFF2972 0.27 -1.5
404,533 + GFF2972 0.27 +1.0
404,534 - GFF2972 0.27 +0.5
404,534 - GFF2972 0.27 -1.1
404,534 - GFF2972 0.27 -1.7
404,534 - GFF2972 0.27 -1.5
404,743 + GFF2972 0.46 -2.5
404,743 + GFF2972 0.46 +0.5
404,743 + GFF2972 0.46 +0.4
404,743 + GFF2972 0.46 +0.1
404,743 + GFF2972 0.46 -3.0
404,743 + GFF2972 0.46 +0.1
404,743 + GFF2972 0.46 -0.1
404,743 + GFF2972 0.46 +1.4
404,743 + GFF2972 0.46 -0.3
404,744 - GFF2972 0.46 -1.5
404,744 - GFF2972 0.46 -0.8
404,744 - GFF2972 0.46 -2.2
404,744 - GFF2972 0.46 +0.0
404,744 - GFF2972 0.46 +0.4
404,744 - GFF2972 0.46 +2.3
404,899 + GFF2972 0.60 -2.2
404,900 - GFF2972 0.60 +1.1
404,900 - GFF2972 0.60 +0.4
404,900 - GFF2972 0.60 -0.5
404,929 + GFF2972 0.63 -1.7
404,929 + GFF2972 0.63 +2.5
404,929 + GFF2972 0.63 -1.9
404,929 + GFF2972 0.63 +0.7
404,929 + GFF2972 0.63 -1.8
404,929 + GFF2972 0.63 +1.6
404,929 + GFF2972 0.63 -0.9
404,930 - GFF2972 0.63 -2.8
404,930 - GFF2972 0.63 +0.7
404,930 - GFF2972 0.63 -0.7
404,930 - GFF2972 0.63 -0.6
404,941 + GFF2972 0.64 -0.3
404,941 + GFF2972 0.64 +0.6
404,941 + GFF2972 0.64 -0.1
404,941 + GFF2972 0.64 -0.2
404,941 + GFF2972 0.64 +1.3
404,941 + GFF2972 0.64 +0.2
404,941 + GFF2972 0.64 -1.1
404,942 - GFF2972 0.64 -1.7
404,942 - GFF2972 0.64 +1.8
404,942 - GFF2972 0.64 -0.1
404,942 - GFF2972 0.64 -1.7
404,942 - GFF2972 0.64 -2.5
404,942 - GFF2972 0.64 -0.3
404,942 - GFF2972 0.64 +0.2
404,942 - GFF2972 0.64 -0.5
405,037 + GFF2972 0.73 -1.3
405,037 + GFF2972 0.73 -1.7
405,037 + GFF2972 0.73 -1.3
405,037 + GFF2972 0.73 +0.1
405,037 + GFF2972 0.73 -2.0
405,038 - GFF2972 0.73 -0.7
405,038 - GFF2972 0.73 -1.8
405,038 - GFF2972 0.73 +2.3
405,038 - GFF2972 0.73 -0.6
405,038 - GFF2972 0.73 -1.5
405,064 + GFF2972 0.75 -0.6
405,064 + GFF2972 0.75 +0.3
405,064 + GFF2972 0.75 -2.8
405,064 + GFF2972 0.75 -3.7
405,064 + GFF2972 0.75 -0.9
405,064 + GFF2972 0.75 -0.3
405,064 + GFF2972 0.75 -1.0
405,064 + GFF2972 0.75 +0.6
405,065 - GFF2972 0.75 -3.3
405,065 - GFF2972 0.75 -0.6
405,065 - GFF2972 0.75 -1.1
405,065 - GFF2972 0.75 -1.6
405,115 + GFF2972 0.80 +0.1
405,115 + GFF2972 0.80 +1.0
405,115 + GFF2972 0.80 -1.8
405,116 - GFF2972 0.80 +0.7
405,116 - GFF2972 0.80 -0.1
405,116 - GFF2972 0.80 -2.7
405,116 - GFF2972 0.80 -1.3
405,358 - +1.8
405,365 - -1.5
405,375 + +1.0
405,698 + GFF2973 0.42 +0.0
406,136 - -0.7
406,136 - -1.1
406,136 - +1.2

Or see this region's nucleotide sequence