Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2695 and GFF2696 are separated by 19 nucleotides GFF2696 and GFF2697 overlap by 1 nucleotides GFF2697 and GFF2698 are separated by 49 nucleotides GFF2698 and GFF2699 are separated by 27 nucleotides
GFF2695 - no description, at 123,533 to 124,543
GFF2695
GFF2696 - L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43), at 124,563 to 125,501
GFF2696
GFF2697 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 125,501 to 126,262
GFF2697
GFF2698 - Transcriptional regulator, LysR family, at 126,312 to 127,226
GFF2698
GFF2699 - 4Fe-4S ferredoxin, iron-sulfur binding, at 127,254 to 127,589
GFF2699
Position (kb) 125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 125.108 kb on - strand, within GFF2696 at 125.108 kb on - strand, within GFF2696 at 125.791 kb on - strand, within GFF2697 at 125.791 kb on - strand, within GFF2697 at 125.940 kb on + strand, within GFF2697 at 125.940 kb on + strand, within GFF2697 at 125.941 kb on - strand, within GFF2697 at 126.862 kb on + strand, within GFF2698 at 126.862 kb on + strand, within GFF2698 at 126.862 kb on + strand, within GFF2698 at 126.863 kb on - strand, within GFF2698 at 126.863 kb on - strand, within GFF2698 at 127.204 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 125,108 - GFF2696 0.58 +2.0 125,108 - GFF2696 0.58 +0.0 125,791 - GFF2697 0.38 -2.1 125,791 - GFF2697 0.38 -1.8 125,940 + GFF2697 0.58 -2.1 125,940 + GFF2697 0.58 -0.5 125,941 - GFF2697 0.58 -2.0 126,862 + GFF2698 0.60 -1.8 126,862 + GFF2698 0.60 -2.2 126,862 + GFF2698 0.60 -3.3 126,863 - GFF2698 0.60 +1.6 126,863 - GFF2698 0.60 -0.4 127,204 + +2.2
Or see this region's nucleotide sequence