Strain Fitness in Variovorax sp. SCN45 around GFF2684

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
106,908	-		GFF2683	0.44	+0.0
106,908	-		GFF2683	0.44	-0.9
106,908	-		GFF2683	0.44	-0.3
106,949	+		GFF2683	0.47	-1.6
106,949	+		GFF2683	0.47	+0.0
106,949	+		GFF2683	0.47	-2.3
106,950	-		GFF2683	0.47	-1.6
106,950	-		GFF2683	0.47	-1.8
106,950	-		GFF2683	0.47	-2.6
106,950	-		GFF2683	0.47	+0.7
106,950	-		GFF2683	0.47	-0.5
106,950	-		GFF2683	0.47	+1.4
107,034	-		GFF2683	0.52	-0.1
107,045	+		GFF2683	0.53	+0.4
107,045	+		GFF2683	0.53	+0.4
107,045	+		GFF2683	0.53	+0.7
107,045	+		GFF2683	0.53	-2.3
107,045	+		GFF2683	0.53	-3.5
107,045	+		GFF2683	0.53	-1.8
107,045	+		GFF2683	0.53	-2.5
107,045	+		GFF2683	0.53	+0.0
107,045	+		GFF2683	0.53	+2.6
107,046	-		GFF2683	0.53	-2.0
107,046	-		GFF2683	0.53	+0.7
107,046	-		GFF2683	0.53	+0.8
107,046	-		GFF2683	0.53	-0.8
107,046	-		GFF2683	0.53	+1.3
107,213	+		GFF2683	0.64	-2.0
107,213	+		GFF2683	0.64	+0.1
107,213	+		GFF2683	0.64	-1.3
107,213	+		GFF2683	0.64	-0.8
107,213	+		GFF2683	0.64	-4.5
107,213	+		GFF2683	0.64	+0.6
107,213	+		GFF2683	0.64	+0.6
107,214	-		GFF2683	0.64	-0.5
107,214	-		GFF2683	0.64	-2.5
107,214	-		GFF2683	0.64	+1.0
107,255	+		GFF2683	0.67	+0.0
107,255	+		GFF2683	0.67	+0.2
107,255	+		GFF2683	0.67	-3.1
107,255	+		GFF2683	0.67	-0.3
107,255	+		GFF2683	0.67	+0.8
107,255	+		GFF2683	0.67	+1.2
107,256	-		GFF2683	0.67	+0.7
107,256	-		GFF2683	0.67	-0.4
107,256	-		GFF2683	0.67	-2.8
107,256	-		GFF2683	0.67	+1.9
107,256	-		GFF2683	0.67	+1.7
107,256	-		GFF2683	0.67	+0.1
107,258	+		GFF2683	0.67	+0.0
107,258	+		GFF2683	0.67	+0.1
107,259	-		GFF2683	0.67	-1.3
107,259	-		GFF2683	0.67	-1.4
107,259	-		GFF2683	0.67	+0.1
107,318	+		GFF2683	0.71	+1.0
107,319	-		GFF2683	0.71	-0.7
107,319	-		GFF2683	0.71	+0.3
107,319	-		GFF2683	0.71	+1.2
107,319	-		GFF2683	0.71	+1.5
107,427	-		GFF2683	0.79	+0.7
107,427	-		GFF2683	0.79	+0.5
107,576	+		GFF2683	0.88	+0.4
107,593	-		GFF2683	0.90	-0.1
107,684	+				+0.2
107,684	+				-1.2
107,684	+				+0.0
107,684	+				-0.5
107,684	+				+2.5
107,684	+				-0.1
107,684	+				+0.0
107,684	+				-0.8
107,684	+				-2.6
107,684	+				+1.3
107,684	+				+1.1
107,684	+				+1.4
107,684	+				+0.3
107,684	+				-2.0
107,685	-				+2.8
107,685	-				+1.5
107,685	-				+0.4
107,685	-				+0.7
107,685	-				+0.8
107,685	-				+1.6
107,726	+				+1.3
107,726	+				-0.2
107,726	+				-1.6
107,726	+				-1.8
107,726	+				-3.6
107,726	+				-0.2
107,726	+				-0.5
107,726	+				+0.9
107,726	+				+1.0
107,726	+				-2.8
107,726	+				-0.7
107,726	+				-0.5
107,727	-				+0.6
107,727	-				-1.0
107,773	+				-0.5
107,773	+				-0.6
107,773	+				+1.6
107,774	-				+3.1
107,774	-				-1.2
107,774	-				-1.2
107,774	-				+0.3
107,778	+				-1.2
107,778	+				+0.5
107,779	-				+0.0
107,796	+				-1.5
107,796	+				+0.4
107,797	-				-0.0
107,797	-				-1.8
107,797	-				-3.2
107,806	+				-0.0
107,807	-				-1.4
107,849	+				-0.0
107,850	-				+1.8
107,850	-				-1.6
107,933	+				-3.0
107,933	+				+1.7
107,934	-				-0.9
108,245	+		GFF2684	0.41	+1.2
108,245	+		GFF2684	0.41	+0.8
108,245	+		GFF2684	0.41	+0.6
108,245	+		GFF2684	0.41	-0.8
108,246	-		GFF2684	0.41	-0.9
108,246	-		GFF2684	0.41	-1.6
108,246	-		GFF2684	0.41	-1.3
108,246	-		GFF2684	0.41	+1.6
108,252	+		GFF2684	0.42	-1.6
108,252	+		GFF2684	0.42	+0.0
108,252	+		GFF2684	0.42	+0.6
108,252	+		GFF2684	0.42	+0.1
108,253	-		GFF2684	0.42	+0.4
108,253	-		GFF2684	0.42	+1.9
108,253	-		GFF2684	0.42	+0.4
108,253	-		GFF2684	0.42	+2.9
108,554	+		GFF2684	0.73	+1.9
108,776	+				+1.8
108,776	+				-0.1
108,776	+				-1.1
108,776	+				-0.5
108,776	+				-0.6
108,776	+				-1.4
108,776	+				-0.7
108,777	-				+1.4
108,777	-				-1.4
108,777	-				+0.1
108,777	-				+0.6
108,777	-				+1.0
108,777	-				+0.0
108,777	-				-0.9
108,777	-				-2.1
108,777	-				-1.6
108,777	-				-0.5
108,777	-				-0.4
108,777	-				-0.6
108,818	+				-1.8
108,841	+				+0.2
108,842	-				+1.2
109,263	-		GFF2685	0.17	+0.1
109,445	+		GFF2685	0.25	-0.6
109,446	-		GFF2685	0.25	+2.0
109,446	-		GFF2685	0.25	+1.2
109,549	+		GFF2685	0.29	-0.9
109,567	+		GFF2685	0.29	-2.6
109,568	-		GFF2685	0.29	-0.4
109,568	-		GFF2685	0.29	-0.4