Strain Fitness in Variovorax sp. SCN45 around GFF2667

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2666 and GFF2667 are separated by 5 nucleotidesGFF2667 and GFF2668 are separated by 9 nucleotidesGFF2668 and GFF2669 overlap by 4 nucleotides GFF2666 - Membrane-bound lytic murein transglycosylase B, at 89,586 to 90,668 GFF2666 GFF2667 - COG4339 metal-dependent phosphohydrolase, HD superfamily, at 90,674 to 91,294 GFF2667 GFF2668 - hypothetical protein, at 91,304 to 91,792 GFF2668 GFF2669 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 91,789 to 92,859 GFF2669 Position (kb) 90 91 92Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 89.716 kb on - strand, within GFF2666at 89.881 kb on - strand, within GFF2666at 89.973 kb on + strand, within GFF2666at 89.974 kb on - strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.025 kb on - strand, within GFF2666at 90.025 kb on - strand, within GFF2666at 90.025 kb on - strand, within GFF2666at 90.202 kb on - strand, within GFF2666at 90.202 kb on - strand, within GFF2666at 90.252 kb on + strand, within GFF2666at 90.252 kb on + strand, within GFF2666at 90.330 kb on + strand, within GFF2666at 90.330 kb on + strand, within GFF2666at 90.330 kb on + strand, within GFF2666at 90.373 kb on - strand, within GFF2666at 90.373 kb on - strand, within GFF2666at 90.555 kb on + strand, within GFF2666at 90.555 kb on + strand, within GFF2666at 90.555 kb on + strand, within GFF2666at 90.555 kb on + strand, within GFF2666at 90.556 kb on - strand, within GFF2666at 90.556 kb on - strand, within GFF2666at 90.579 kb on + strandat 90.609 kb on + strandat 90.609 kb on + strandat 90.610 kb on - strandat 90.610 kb on - strandat 90.610 kb on - strandat 90.610 kb on - strandat 90.774 kb on - strand, within GFF2667at 90.794 kb on + strand, within GFF2667at 90.905 kb on + strand, within GFF2667at 91.118 kb on + strand, within GFF2667at 91.119 kb on - strand, within GFF2667at 91.220 kb on + strand, within GFF2667at 91.221 kb on - strand, within GFF2667at 91.221 kb on - strand, within GFF2667at 91.665 kb on + strand, within GFF2668at 91.665 kb on + strand, within GFF2668at 91.666 kb on - strand, within GFF2668at 91.666 kb on - strand, within GFF2668at 91.843 kb on + strandat 91.843 kb on + strandat 91.919 kb on + strand, within GFF2669at 92.173 kb on + strand, within GFF2669at 92.173 kb on + strand, within GFF2669at 92.173 kb on + strand, within GFF2669at 92.173 kb on + strand, within GFF2669at 92.174 kb on - strand, within GFF2669

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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89,716 - GFF2666 0.12 -0.2
89,881 - GFF2666 0.27 +0.8
89,973 + GFF2666 0.36 +0.3
89,974 - GFF2666 0.36 -0.1
90,024 + GFF2666 0.40 +0.3
90,024 + GFF2666 0.40 -1.7
90,024 + GFF2666 0.40 -0.5
90,024 + GFF2666 0.40 +1.8
90,024 + GFF2666 0.40 +0.6
90,024 + GFF2666 0.40 +0.1
90,024 + GFF2666 0.40 +0.8
90,024 + GFF2666 0.40 -0.0
90,024 + GFF2666 0.40 +0.3
90,025 - GFF2666 0.41 +1.8
90,025 - GFF2666 0.41 -0.7
90,025 - GFF2666 0.41 -3.1
90,202 - GFF2666 0.57 +1.4
90,202 - GFF2666 0.57 +1.1
90,252 + GFF2666 0.61 -1.2
90,252 + GFF2666 0.61 +1.0
90,330 + GFF2666 0.69 -2.3
90,330 + GFF2666 0.69 +1.0
90,330 + GFF2666 0.69 -0.4
90,373 - GFF2666 0.73 -0.5
90,373 - GFF2666 0.73 -2.9
90,555 + GFF2666 0.89 +0.2
90,555 + GFF2666 0.89 -2.6
90,555 + GFF2666 0.89 +0.6
90,555 + GFF2666 0.89 -0.5
90,556 - GFF2666 0.90 +0.2
90,556 - GFF2666 0.90 +0.0
90,579 + -1.6
90,609 + +0.0
90,609 + -0.7
90,610 - -1.4
90,610 - +1.5
90,610 - +0.8
90,610 - -2.7
90,774 - GFF2667 0.16 +1.6
90,794 + GFF2667 0.19 -2.2
90,905 + GFF2667 0.37 +1.3
91,118 + GFF2667 0.71 -0.1
91,119 - GFF2667 0.72 +0.6
91,220 + GFF2667 0.88 +0.0
91,221 - GFF2667 0.88 -2.6
91,221 - GFF2667 0.88 -1.2
91,665 + GFF2668 0.74 +0.0
91,665 + GFF2668 0.74 -3.0
91,666 - GFF2668 0.74 -3.8
91,666 - GFF2668 0.74 +1.1
91,843 + -1.8
91,843 + -0.6
91,919 + GFF2669 0.12 -1.0
92,173 + GFF2669 0.36 -3.0
92,173 + GFF2669 0.36 +0.4
92,173 + GFF2669 0.36 -0.1
92,173 + GFF2669 0.36 -0.7
92,174 - GFF2669 0.36 -0.6

Or see this region's nucleotide sequence