Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2639 and GFF2640 are separated by 28 nucleotides GFF2640 and GFF2641 are separated by 31 nucleotides GFF2641 and GFF2642 overlap by 14 nucleotides GFF2642 and GFF2643 are separated by 62 nucleotides
GFF2639 - Ferrichrome-iron receptor, at 52,646 to 54,940
GFF2639
GFF2640 - PKHD-type hydroxylase YbiX, at 54,969 to 55,655
GFF2640
GFF2641 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 55,687 to 56,538
GFF2641
GFF2642 - Enoyl-CoA hydratase (EC 4.2.1.17), at 56,525 to 57,313
GFF2642
GFF2643 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 57,376 to 58,206
GFF2643
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.717 kb on - strand at 54.717 kb on - strand at 54.767 kb on + strand at 54.767 kb on + strand at 54.768 kb on - strand at 54.794 kb on + strand at 54.794 kb on + strand at 54.794 kb on + strand at 54.795 kb on - strand at 54.809 kb on + strand at 54.809 kb on + strand at 54.810 kb on - strand at 54.810 kb on - strand at 54.810 kb on - strand at 54.851 kb on + strand at 54.851 kb on + strand at 54.852 kb on - strand at 54.852 kb on - strand at 54.854 kb on + strand at 54.854 kb on + strand at 54.855 kb on - strand at 54.929 kb on + strand at 54.929 kb on + strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.963 kb on + strand at 54.964 kb on - strand at 54.964 kb on - strand at 54.991 kb on + strand at 54.992 kb on - strand at 55.213 kb on - strand, within GFF2640 at 55.353 kb on + strand, within GFF2640 at 55.354 kb on - strand, within GFF2640 at 55.562 kb on - strand, within GFF2640 at 55.621 kb on - strand at 55.621 kb on - strand at 55.621 kb on - strand at 55.621 kb on - strand at 55.653 kb on + strand at 55.654 kb on - strand at 56.071 kb on + strand, within GFF2641 at 56.071 kb on + strand, within GFF2641 at 56.071 kb on + strand, within GFF2641 at 56.071 kb on + strand, within GFF2641 at 56.071 kb on + strand, within GFF2641 at 56.072 kb on - strand, within GFF2641 at 56.072 kb on - strand, within GFF2641 at 56.104 kb on + strand, within GFF2641 at 56.104 kb on + strand, within GFF2641 at 56.105 kb on - strand, within GFF2641 at 56.105 kb on - strand, within GFF2641 at 56.105 kb on - strand, within GFF2641 at 56.105 kb on - strand, within GFF2641 at 56.191 kb on + strand, within GFF2641 at 56.191 kb on + strand, within GFF2641 at 56.192 kb on - strand, within GFF2641 at 56.354 kb on + strand, within GFF2641 at 56.717 kb on + strand, within GFF2642 at 56.868 kb on + strand, within GFF2642 at 56.868 kb on + strand, within GFF2642 at 56.868 kb on + strand, within GFF2642 at 56.868 kb on + strand, within GFF2642 at 56.868 kb on + strand, within GFF2642 at 56.869 kb on - strand, within GFF2642 at 56.869 kb on - strand, within GFF2642 at 56.869 kb on - strand, within GFF2642 at 56.869 kb on - strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.114 kb on - strand, within GFF2642 at 57.180 kb on - strand, within GFF2642 at 57.269 kb on + strand at 57.269 kb on + strand at 57.269 kb on + strand at 57.269 kb on + strand at 57.269 kb on + strand at 57.270 kb on - strand at 57.281 kb on + strand at 57.282 kb on - strand at 57.316 kb on - strand at 57.387 kb on + strand at 57.388 kb on - strand at 57.425 kb on + strand at 57.452 kb on + strand at 57.452 kb on + strand at 57.452 kb on + strand at 57.452 kb on + strand at 57.452 kb on + strand at 57.453 kb on - strand at 57.453 kb on - strand at 57.453 kb on - strand at 57.480 kb on + strand, within GFF2643 at 57.480 kb on + strand, within GFF2643
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 54,717 - +0.4 54,717 - -3.1 54,767 + +0.9 54,767 + -2.5 54,768 - +1.0 54,794 + -0.1 54,794 + +0.2 54,794 + +1.5 54,795 - +1.4 54,809 + +0.3 54,809 + -0.5 54,810 - -0.3 54,810 - -0.5 54,810 - -1.2 54,851 + +2.5 54,851 + +0.6 54,852 - -0.8 54,852 - +0.5 54,854 + +0.6 54,854 + -1.0 54,855 - +0.3 54,929 + +0.2 54,929 + +1.5 54,930 - +1.2 54,930 - -2.8 54,963 + -2.4 54,964 - +0.9 54,964 - -1.6 54,991 + +0.5 54,992 - -2.6 55,213 - GFF2640 0.36 -0.4 55,353 + GFF2640 0.56 -0.6 55,354 - GFF2640 0.56 -2.1 55,562 - GFF2640 0.86 -2.2 55,621 - +1.3 55,621 - -2.0 55,621 - +0.2 55,621 - -3.1 55,653 + +0.0 55,654 - -1.4 56,071 + GFF2641 0.45 -0.4 56,071 + GFF2641 0.45 -2.2 56,071 + GFF2641 0.45 +2.1 56,071 + GFF2641 0.45 -2.0 56,071 + GFF2641 0.45 -2.6 56,072 - GFF2641 0.45 -2.4 56,072 - GFF2641 0.45 +0.3 56,104 + GFF2641 0.49 -0.4 56,104 + GFF2641 0.49 -0.7 56,105 - GFF2641 0.49 +1.0 56,105 - GFF2641 0.49 -1.2 56,105 - GFF2641 0.49 +0.5 56,105 - GFF2641 0.49 -3.5 56,191 + GFF2641 0.59 -0.5 56,191 + GFF2641 0.59 -0.4 56,192 - GFF2641 0.59 -0.4 56,354 + GFF2641 0.78 -1.4 56,717 + GFF2642 0.24 -0.2 56,868 + GFF2642 0.43 -3.2 56,868 + GFF2642 0.43 -2.1 56,868 + GFF2642 0.43 -1.8 56,868 + GFF2642 0.43 -1.8 56,868 + GFF2642 0.43 -0.2 56,869 - GFF2642 0.44 +0.5 56,869 - GFF2642 0.44 -0.7 56,869 - GFF2642 0.44 -0.4 56,869 - GFF2642 0.44 -0.4 57,113 + GFF2642 0.75 -1.5 57,113 + GFF2642 0.75 -0.7 57,113 + GFF2642 0.75 -1.1 57,113 + GFF2642 0.75 -1.0 57,113 + GFF2642 0.75 -3.4 57,113 + GFF2642 0.75 -0.2 57,114 - GFF2642 0.75 +0.6 57,180 - GFF2642 0.83 -0.0 57,269 + -0.3 57,269 + +0.5 57,269 + -0.2 57,269 + -1.0 57,269 + -1.0 57,270 - -2.8 57,281 + -0.8 57,282 - -0.0 57,316 - -0.4 57,387 + -2.2 57,388 - -0.2 57,425 + -1.0 57,452 + +0.8 57,452 + -0.7 57,452 + +1.6 57,452 + -1.2 57,452 + -2.0 57,453 - +0.9 57,453 - +0.7 57,453 - -0.1 57,480 + GFF2643 0.13 -2.2 57,480 + GFF2643 0.13 -1.7
Or see this region's nucleotide sequence