Strain Fitness in Variovorax sp. SCN45 around GFF2601

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
5,803	-		GFF2600	0.14	+1.8
5,803	-		GFF2600	0.14	-2.0
5,811	+		GFF2600	0.15	-2.2
5,811	+		GFF2600	0.15	+1.6
5,811	+		GFF2600	0.15	-3.0
5,811	+		GFF2600	0.15	-0.7
5,811	+		GFF2600	0.15	-2.8
5,811	+		GFF2600	0.15	-2.3
5,811	+		GFF2600	0.15	-1.2
5,811	+		GFF2600	0.15	-1.6
5,811	+		GFF2600	0.15	-0.2
5,811	+		GFF2600	0.15	+1.6
5,811	+		GFF2600	0.15	+0.8
5,811	+		GFF2600	0.15	-0.4
5,812	-		GFF2600	0.15	-1.8
5,812	-		GFF2600	0.15	+1.2
5,812	-		GFF2600	0.15	-0.3
5,812	-		GFF2600	0.15	-1.1
5,812	-		GFF2600	0.15	-0.5
5,812	-		GFF2600	0.15	-0.1
5,812	-		GFF2600	0.15	-1.3
5,812	-		GFF2600	0.15	-1.4
5,812	-		GFF2600	0.15	+1.3
5,812	-		GFF2600	0.15	+0.1
5,812	-		GFF2600	0.15	+0.8
5,812	-		GFF2600	0.15	-0.7
6,012	+		GFF2600	0.37	+0.4
6,013	-		GFF2600	0.37	-0.8
6,013	-		GFF2600	0.37	-0.2
6,013	-		GFF2600	0.37	-0.7
6,013	-		GFF2600	0.37	-1.7
6,013	-		GFF2600	0.37	+0.8
6,111	+		GFF2600	0.48	+1.1
6,111	+		GFF2600	0.48	-2.5
6,111	+		GFF2600	0.48	-1.8
6,111	+		GFF2600	0.48	-0.2
6,111	+		GFF2600	0.48	+1.6
6,112	-		GFF2600	0.48	-1.7
6,112	-		GFF2600	0.48	-0.9
6,112	-		GFF2600	0.48	+0.1
6,561	+				+1.3
6,561	+				-2.1
6,561	+				+1.0
6,562	-				+2.5
6,562	-				-1.0
6,647	+				+0.4
6,647	+				-1.9
6,648	-				+0.2
6,648	-				+1.8
6,648	-				-3.8
6,678	-				-0.2
6,759	+				+2.2
6,760	-				-0.1
6,760	-				-3.7
6,760	-				+0.3
6,760	-				+0.6
6,990	+		GFF2601	0.25	+2.7
6,990	+		GFF2601	0.25	-2.7
6,990	+		GFF2601	0.25	-1.5
6,990	+		GFF2601	0.25	-1.2
6,990	+		GFF2601	0.25	-3.2
6,991	-		GFF2601	0.25	-0.7
6,991	-		GFF2601	0.25	+0.7
6,991	-		GFF2601	0.25	-1.4
7,053	+		GFF2601	0.33	+1.7
7,054	-		GFF2601	0.33	-2.3
7,054	-		GFF2601	0.33	+0.4
7,054	-		GFF2601	0.33	-0.5
7,132	-		GFF2601	0.43	+0.5
7,132	-		GFF2601	0.43	-2.5
7,132	-		GFF2601	0.43	+0.6
7,164	+		GFF2601	0.47	-0.0
7,164	+		GFF2601	0.47	-2.4
7,164	+		GFF2601	0.47	+1.2
7,165	-		GFF2601	0.47	-2.4
7,165	-		GFF2601	0.47	-1.6
7,165	-		GFF2601	0.47	-0.8
7,165	-		GFF2601	0.47	+1.1
7,165	-		GFF2601	0.47	+0.5
7,206	+		GFF2601	0.52	-0.8
7,206	+		GFF2601	0.52	+0.4
7,206	+		GFF2601	0.52	+1.5
7,207	-		GFF2601	0.52	+1.4
7,207	-		GFF2601	0.52	+2.3
7,207	-		GFF2601	0.52	+1.2
7,207	-		GFF2601	0.52	-1.4
7,238	-		GFF2601	0.56	-2.2
7,706	+		GFF2602	0.18	-1.6
7,707	-		GFF2602	0.18	-1.5
7,707	-		GFF2602	0.18	+0.6
7,709	+		GFF2602	0.18	-3.6
7,766	+		GFF2602	0.27	-3.3
7,779	+		GFF2602	0.29	-0.7
8,042	+		GFF2602	0.68	-1.1
8,043	-		GFF2602	0.68	+0.6
8,090	+		GFF2602	0.75	+0.6
8,090	+		GFF2602	0.75	-1.6
8,090	+		GFF2602	0.75	-1.2
8,090	+		GFF2602	0.75	-0.4
8,090	+		GFF2602	0.75	-1.7
8,090	+		GFF2602	0.75	-1.9
8,090	+		GFF2602	0.75	+1.6
8,090	+		GFF2602	0.75	+1.3
8,091	-		GFF2602	0.75	-1.7
8,091	-		GFF2602	0.75	-2.8
8,091	-		GFF2602	0.75	-0.3
8,091	-		GFF2602	0.75	-0.5
8,091	-		GFF2602	0.75	-0.2
8,091	-		GFF2602	0.75	-1.3
8,115	+		GFF2602	0.79	-1.6
8,147	+		GFF2602	0.84	-0.4
8,234	+				+1.1
8,234	+				-0.5
8,235	-				-0.4