Strain Fitness in Variovorax sp. SCN45 around GFF2579

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2577 and GFF2578 overlap by 4 nucleotidesGFF2578 and GFF2579 are separated by 19 nucleotidesGFF2579 and GFF2580 are separated by 69 nucleotides GFF2577 - 7-carboxy-7-deazaguanine synthase (EC 4.3.99.3), at 634,055 to 634,693 GFF2577 GFF2578 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 634,690 to 635,532 GFF2578 GFF2579 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11), at 635,552 to 636,445 GFF2579 GFF2580 - L-aspartate oxidase (EC 1.4.3.16), at 636,515 to 638,101 GFF2580 Position (kb) 635 636 637Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 634.665 kb on + strandat 634.665 kb on + strandat 634.665 kb on + strandat 634.665 kb on + strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.686 kb on + strandat 634.686 kb on + strandat 634.686 kb on + strandat 634.686 kb on + strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.823 kb on + strand, within GFF2578at 634.823 kb on + strand, within GFF2578at 634.823 kb on + strand, within GFF2578at 634.823 kb on + strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.873 kb on + strand, within GFF2578at 634.874 kb on - strand, within GFF2578at 634.874 kb on - strand, within GFF2578at 634.874 kb on - strand, within GFF2578at 634.973 kb on + strand, within GFF2578at 634.974 kb on - strand, within GFF2578at 635.090 kb on + strand, within GFF2578at 635.090 kb on + strand, within GFF2578at 635.090 kb on + strand, within GFF2578at 635.090 kb on + strand, within GFF2578at 635.090 kb on + strand, within GFF2578at 635.091 kb on - strand, within GFF2578at 635.091 kb on - strand, within GFF2578at 635.091 kb on - strand, within GFF2578at 635.091 kb on - strand, within GFF2578at 635.091 kb on - strand, within GFF2578at 635.334 kb on - strand, within GFF2578at 635.334 kb on - strand, within GFF2578at 635.334 kb on - strand, within GFF2578at 635.334 kb on - strand, within GFF2578at 635.528 kb on + strandat 635.528 kb on + strandat 635.528 kb on + strandat 635.528 kb on + strandat 635.528 kb on + strandat 635.528 kb on + strandat 635.528 kb on + strandat 635.528 kb on + strandat 635.528 kb on + strandat 635.528 kb on + strandat 635.529 kb on - strandat 635.529 kb on - strandat 635.529 kb on - strandat 635.529 kb on - strandat 635.529 kb on - strandat 635.529 kb on - strandat 635.529 kb on - strandat 635.529 kb on - strandat 635.554 kb on - strandat 635.554 kb on - strandat 635.607 kb on + strandat 635.607 kb on + strandat 635.607 kb on + strandat 635.607 kb on + strandat 635.607 kb on + strandat 635.607 kb on + strandat 635.607 kb on + strandat 635.607 kb on + strandat 635.607 kb on + strandat 635.607 kb on + strandat 635.607 kb on + strandat 635.607 kb on + strandat 635.608 kb on - strandat 635.608 kb on - strandat 635.608 kb on - strandat 635.608 kb on - strandat 635.608 kb on - strandat 635.608 kb on - strandat 635.608 kb on - strandat 635.608 kb on - strandat 635.608 kb on - strandat 635.918 kb on + strand, within GFF2579at 635.918 kb on + strand, within GFF2579at 635.918 kb on + strand, within GFF2579at 635.918 kb on + strand, within GFF2579at 635.918 kb on + strand, within GFF2579at 635.918 kb on + strand, within GFF2579at 635.918 kb on + strand, within GFF2579at 635.918 kb on + strand, within GFF2579at 635.918 kb on + strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 635.919 kb on - strand, within GFF2579at 636.084 kb on + strand, within GFF2579at 636.084 kb on + strand, within GFF2579at 636.085 kb on - strand, within GFF2579at 636.165 kb on + strand, within GFF2579at 636.165 kb on + strand, within GFF2579at 636.165 kb on + strand, within GFF2579at 636.166 kb on - strand, within GFF2579at 636.291 kb on + strand, within GFF2579at 636.291 kb on + strand, within GFF2579at 636.292 kb on - strand, within GFF2579at 636.292 kb on - strand, within GFF2579at 636.292 kb on - strand, within GFF2579at 636.399 kb on + strandat 636.696 kb on + strand, within GFF2580at 636.696 kb on + strand, within GFF2580at 636.696 kb on + strand, within GFF2580at 636.697 kb on - strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.780 kb on + strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 636.781 kb on - strand, within GFF2580at 637.011 kb on + strand, within GFF2580at 637.011 kb on + strand, within GFF2580at 637.011 kb on + strand, within GFF2580at 637.011 kb on + strand, within GFF2580at 637.012 kb on - strand, within GFF2580at 637.012 kb on - strand, within GFF2580at 637.012 kb on - strand, within GFF2580at 637.012 kb on - strand, within GFF2580at 637.012 kb on - strand, within GFF2580at 637.012 kb on - strand, within GFF2580at 637.068 kb on + strand, within GFF2580at 637.068 kb on + strand, within GFF2580at 637.068 kb on + strand, within GFF2580at 637.068 kb on + strand, within GFF2580at 637.068 kb on + strand, within GFF2580at 637.068 kb on + strand, within GFF2580at 637.068 kb on + strand, within GFF2580at 637.068 kb on + strand, within GFF2580at 637.068 kb on + strand, within GFF2580at 637.069 kb on - strand, within GFF2580at 637.069 kb on - strand, within GFF2580at 637.069 kb on - strand, within GFF2580at 637.069 kb on - strand, within GFF2580at 637.069 kb on - strand, within GFF2580at 637.069 kb on - strand, within GFF2580at 637.069 kb on - strand, within GFF2580at 637.069 kb on - strand, within GFF2580at 637.069 kb on - strand, within GFF2580at 637.069 kb on - strand, within GFF2580at 637.069 kb on - strand, within GFF2580at 637.194 kb on + strand, within GFF2580at 637.194 kb on + strand, within GFF2580at 637.194 kb on + strand, within GFF2580at 637.194 kb on + strand, within GFF2580at 637.194 kb on + strand, within GFF2580at 637.194 kb on + strand, within GFF2580at 637.194 kb on + strand, within GFF2580at 637.194 kb on + strand, within GFF2580at 637.195 kb on - strand, within GFF2580at 637.195 kb on - strand, within GFF2580at 637.195 kb on - strand, within GFF2580at 637.195 kb on - strand, within GFF2580at 637.195 kb on - strand, within GFF2580at 637.378 kb on - strand, within GFF2580at 637.378 kb on - strand, within GFF2580at 637.378 kb on - strand, within GFF2580at 637.378 kb on - strand, within GFF2580at 637.378 kb on - strand, within GFF2580

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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634,665 + -0.9
634,665 + +1.7
634,665 + -0.2
634,665 + +1.0
634,666 - -2.3
634,666 - -1.5
634,666 - -0.8
634,666 - -1.5
634,666 - +0.5
634,666 - -0.3
634,666 - -2.1
634,666 - +0.7
634,666 - +0.2
634,666 - -1.5
634,686 + -1.0
634,686 + -0.9
634,686 + -0.2
634,686 + -0.1
634,687 - -1.4
634,687 - -1.0
634,687 - +0.9
634,687 - -0.3
634,687 - -0.5
634,687 - +0.0
634,687 - +0.6
634,687 - -1.0
634,687 - +0.1
634,823 + GFF2578 0.16 +0.7
634,823 + GFF2578 0.16 +1.1
634,823 + GFF2578 0.16 -2.7
634,823 + GFF2578 0.16 -1.3
634,824 - GFF2578 0.16 -2.6
634,824 - GFF2578 0.16 -0.4
634,824 - GFF2578 0.16 -0.2
634,824 - GFF2578 0.16 -1.8
634,824 - GFF2578 0.16 +1.2
634,824 - GFF2578 0.16 -1.2
634,873 + GFF2578 0.22 -3.5
634,874 - GFF2578 0.22 +1.2
634,874 - GFF2578 0.22 -1.8
634,874 - GFF2578 0.22 +1.1
634,973 + GFF2578 0.34 -0.8
634,974 - GFF2578 0.34 -1.2
635,090 + GFF2578 0.47 +2.0
635,090 + GFF2578 0.47 -1.4
635,090 + GFF2578 0.47 -3.1
635,090 + GFF2578 0.47 -1.7
635,090 + GFF2578 0.47 +0.1
635,091 - GFF2578 0.48 -1.9
635,091 - GFF2578 0.48 -2.7
635,091 - GFF2578 0.48 -2.3
635,091 - GFF2578 0.48 -2.1
635,091 - GFF2578 0.48 -0.6
635,334 - GFF2578 0.76 -1.2
635,334 - GFF2578 0.76 -2.1
635,334 - GFF2578 0.76 -1.0
635,334 - GFF2578 0.76 -1.2
635,528 + +1.2
635,528 + -1.9
635,528 + -2.2
635,528 + -1.2
635,528 + -1.0
635,528 + -1.4
635,528 + +1.5
635,528 + -0.8
635,528 + -2.7
635,528 + -1.1
635,529 - +0.6
635,529 - -1.1
635,529 - -0.2
635,529 - +0.2
635,529 - +0.3
635,529 - +2.3
635,529 - -1.4
635,529 - +0.1
635,554 - +0.2
635,554 - -0.2
635,607 + +1.0
635,607 + -2.9
635,607 + +0.0
635,607 + -1.1
635,607 + +1.3
635,607 + +1.3
635,607 + -4.3
635,607 + -2.0
635,607 + +1.5
635,607 + -0.2
635,607 + -2.0
635,607 + -1.1
635,608 - -0.0
635,608 - -0.8
635,608 - +0.4
635,608 - -0.5
635,608 - +0.2
635,608 - +1.8
635,608 - -1.3
635,608 - +0.8
635,608 - -0.1
635,918 + GFF2579 0.41 -3.2
635,918 + GFF2579 0.41 -1.5
635,918 + GFF2579 0.41 +1.6
635,918 + GFF2579 0.41 +0.9
635,918 + GFF2579 0.41 -0.0
635,918 + GFF2579 0.41 -0.2
635,918 + GFF2579 0.41 -1.4
635,918 + GFF2579 0.41 +1.4
635,918 + GFF2579 0.41 -0.2
635,919 - GFF2579 0.41 -1.4
635,919 - GFF2579 0.41 -0.0
635,919 - GFF2579 0.41 +0.2
635,919 - GFF2579 0.41 -1.3
635,919 - GFF2579 0.41 -0.7
635,919 - GFF2579 0.41 -2.2
635,919 - GFF2579 0.41 -1.4
635,919 - GFF2579 0.41 -0.4
635,919 - GFF2579 0.41 +1.8
635,919 - GFF2579 0.41 -0.1
635,919 - GFF2579 0.41 -1.9
635,919 - GFF2579 0.41 -1.4
635,919 - GFF2579 0.41 -3.6
636,084 + GFF2579 0.60 -1.0
636,084 + GFF2579 0.60 -0.2
636,085 - GFF2579 0.60 -0.5
636,165 + GFF2579 0.69 +0.2
636,165 + GFF2579 0.69 +0.6
636,165 + GFF2579 0.69 +0.9
636,166 - GFF2579 0.69 -1.8
636,291 + GFF2579 0.83 -0.1
636,291 + GFF2579 0.83 -0.5
636,292 - GFF2579 0.83 -0.1
636,292 - GFF2579 0.83 +0.8
636,292 - GFF2579 0.83 -2.2
636,399 + +1.4
636,696 + GFF2580 0.11 -0.6
636,696 + GFF2580 0.11 +2.0
636,696 + GFF2580 0.11 -2.5
636,697 - GFF2580 0.11 -0.8
636,780 + GFF2580 0.17 -1.0
636,780 + GFF2580 0.17 -0.3
636,780 + GFF2580 0.17 +0.2
636,780 + GFF2580 0.17 -0.5
636,780 + GFF2580 0.17 -0.6
636,780 + GFF2580 0.17 +0.6
636,780 + GFF2580 0.17 +0.4
636,780 + GFF2580 0.17 +1.2
636,780 + GFF2580 0.17 +0.5
636,780 + GFF2580 0.17 +0.8
636,780 + GFF2580 0.17 +0.2
636,780 + GFF2580 0.17 +1.2
636,780 + GFF2580 0.17 -0.7
636,780 + GFF2580 0.17 +1.1
636,781 - GFF2580 0.17 -1.6
636,781 - GFF2580 0.17 +0.3
636,781 - GFF2580 0.17 -1.6
636,781 - GFF2580 0.17 +0.9
636,781 - GFF2580 0.17 +0.5
636,781 - GFF2580 0.17 -1.5
636,781 - GFF2580 0.17 -0.1
636,781 - GFF2580 0.17 -2.3
636,781 - GFF2580 0.17 -3.5
636,781 - GFF2580 0.17 -2.2
636,781 - GFF2580 0.17 -1.0
636,781 - GFF2580 0.17 -0.8
637,011 + GFF2580 0.31 +0.7
637,011 + GFF2580 0.31 -3.8
637,011 + GFF2580 0.31 -0.3
637,011 + GFF2580 0.31 -1.5
637,012 - GFF2580 0.31 -0.8
637,012 - GFF2580 0.31 -0.2
637,012 - GFF2580 0.31 -1.2
637,012 - GFF2580 0.31 +1.1
637,012 - GFF2580 0.31 +0.6
637,012 - GFF2580 0.31 +0.5
637,068 + GFF2580 0.35 -2.9
637,068 + GFF2580 0.35 -0.4
637,068 + GFF2580 0.35 +0.2
637,068 + GFF2580 0.35 +0.4
637,068 + GFF2580 0.35 -2.8
637,068 + GFF2580 0.35 -0.8
637,068 + GFF2580 0.35 -1.5
637,068 + GFF2580 0.35 +0.9
637,068 + GFF2580 0.35 -0.0
637,069 - GFF2580 0.35 -4.0
637,069 - GFF2580 0.35 +0.6
637,069 - GFF2580 0.35 -0.3
637,069 - GFF2580 0.35 -1.4
637,069 - GFF2580 0.35 +1.5
637,069 - GFF2580 0.35 -0.2
637,069 - GFF2580 0.35 -1.9
637,069 - GFF2580 0.35 -0.8
637,069 - GFF2580 0.35 -2.3
637,069 - GFF2580 0.35 +1.4
637,069 - GFF2580 0.35 +0.7
637,194 + GFF2580 0.43 -0.3
637,194 + GFF2580 0.43 +0.4
637,194 + GFF2580 0.43 -1.3
637,194 + GFF2580 0.43 -0.2
637,194 + GFF2580 0.43 +0.9
637,194 + GFF2580 0.43 +1.1
637,194 + GFF2580 0.43 +4.5
637,194 + GFF2580 0.43 -0.2
637,195 - GFF2580 0.43 +0.1
637,195 - GFF2580 0.43 -0.0
637,195 - GFF2580 0.43 -3.0
637,195 - GFF2580 0.43 +1.6
637,195 - GFF2580 0.43 +0.9
637,378 - GFF2580 0.54 -2.3
637,378 - GFF2580 0.54 -0.8
637,378 - GFF2580 0.54 +0.8
637,378 - GFF2580 0.54 -0.8
637,378 - GFF2580 0.54 -3.8

Or see this region's nucleotide sequence