Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2334 and GFF2335 are separated by 79 nucleotides GFF2335 and GFF2336 overlap by 4 nucleotides GFF2336 and GFF2337 are separated by 141 nucleotides
GFF2334 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 384,173 to 385,363
GFF2334
GFF2335 - Lactoylglutathione lyase and related lyases, at 385,443 to 385,859
GFF2335
GFF2336 - Transcriptional regulator, AraC family, at 385,856 to 386,329
GFF2336
GFF2337 - hypothetical protein, at 386,471 to 388,066
GFF2337
Position (kb) 385
386 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 384.651 kb on + strand, within GFF2334 at 384.651 kb on + strand, within GFF2334 at 384.652 kb on - strand, within GFF2334 at 384.673 kb on - strand, within GFF2334 at 384.673 kb on - strand, within GFF2334 at 384.724 kb on - strand, within GFF2334 at 384.724 kb on - strand, within GFF2334 at 384.777 kb on + strand, within GFF2334 at 384.777 kb on + strand, within GFF2334 at 384.778 kb on - strand, within GFF2334 at 384.786 kb on + strand, within GFF2334 at 384.786 kb on + strand, within GFF2334 at 384.786 kb on + strand, within GFF2334 at 385.182 kb on + strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.193 kb on + strand, within GFF2334 at 385.292 kb on + strand at 385.357 kb on + strand at 385.358 kb on - strand at 385.358 kb on - strand at 385.358 kb on - strand at 385.576 kb on + strand, within GFF2335 at 385.576 kb on + strand, within GFF2335 at 385.577 kb on - strand, within GFF2335 at 385.577 kb on - strand, within GFF2335 at 385.745 kb on - strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.796 kb on - strand, within GFF2335 at 385.796 kb on - strand, within GFF2335 at 385.796 kb on - strand, within GFF2335 at 385.828 kb on + strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.836 kb on + strand at 385.837 kb on - strand at 385.837 kb on - strand at 385.847 kb on + strand at 385.847 kb on + strand at 386.163 kb on + strand, within GFF2336 at 386.231 kb on + strand, within GFF2336 at 386.424 kb on + strand at 386.424 kb on + strand at 386.425 kb on - strand at 386.425 kb on - strand at 386.425 kb on - strand at 386.493 kb on + strand at 386.493 kb on + strand at 386.494 kb on - strand at 386.495 kb on + strand at 386.495 kb on + strand at 386.496 kb on - strand at 386.496 kb on - strand at 386.496 kb on - strand at 386.496 kb on - strand at 386.709 kb on + strand, within GFF2337 at 386.710 kb on - strand, within GFF2337 at 386.778 kb on + strand, within GFF2337 at 386.823 kb on + strand, within GFF2337 at 386.823 kb on + strand, within GFF2337 at 386.824 kb on - strand, within GFF2337 at 386.824 kb on - strand, within GFF2337 at 386.829 kb on + strand, within GFF2337 at 386.830 kb on - strand, within GFF2337
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 384,651 + GFF2334 0.40 -0.8 384,651 + GFF2334 0.40 -2.0 384,652 - GFF2334 0.40 -3.0 384,673 - GFF2334 0.42 +0.2 384,673 - GFF2334 0.42 -0.1 384,724 - GFF2334 0.46 -1.3 384,724 - GFF2334 0.46 -1.0 384,777 + GFF2334 0.51 -2.0 384,777 + GFF2334 0.51 -0.6 384,778 - GFF2334 0.51 -4.4 384,786 + GFF2334 0.51 +0.4 384,786 + GFF2334 0.51 -2.0 384,786 + GFF2334 0.51 -1.8 385,182 + GFF2334 0.85 -2.2 385,183 - GFF2334 0.85 -0.2 385,183 - GFF2334 0.85 -2.6 385,183 - GFF2334 0.85 +0.7 385,183 - GFF2334 0.85 +0.8 385,193 + GFF2334 0.86 -3.6 385,292 + -1.2 385,357 + -1.6 385,358 - -1.5 385,358 - +1.3 385,358 - +1.5 385,576 + GFF2335 0.32 +2.0 385,576 + GFF2335 0.32 -1.3 385,577 - GFF2335 0.32 -1.7 385,577 - GFF2335 0.32 -1.0 385,745 - GFF2335 0.72 -0.4 385,795 + GFF2335 0.84 -1.8 385,795 + GFF2335 0.84 +0.3 385,795 + GFF2335 0.84 -2.4 385,795 + GFF2335 0.84 -0.4 385,795 + GFF2335 0.84 -1.5 385,795 + GFF2335 0.84 +0.8 385,795 + GFF2335 0.84 +1.8 385,796 - GFF2335 0.85 +0.9 385,796 - GFF2335 0.85 -0.2 385,796 - GFF2335 0.85 -0.2 385,828 + -3.8 385,829 - -0.6 385,829 - -0.8 385,829 - -0.0 385,829 - +0.8 385,829 - -0.3 385,829 - +0.1 385,829 - -2.2 385,836 + -1.0 385,837 - -1.2 385,837 - -0.8 385,847 + +2.0 385,847 + +0.1 386,163 + GFF2336 0.65 +0.8 386,231 + GFF2336 0.79 -0.6 386,424 + -0.7 386,424 + -3.3 386,425 - +0.5 386,425 - -0.2 386,425 - +1.2 386,493 + -0.0 386,493 + +1.2 386,494 - +0.7 386,495 + -0.7 386,495 + -0.5 386,496 - +0.4 386,496 - +0.6 386,496 - -0.8 386,496 - -1.0 386,709 + GFF2337 0.15 -0.5 386,710 - GFF2337 0.15 -2.4 386,778 + GFF2337 0.19 +1.8 386,823 + GFF2337 0.22 -1.0 386,823 + GFF2337 0.22 -1.5 386,824 - GFF2337 0.22 -2.4 386,824 - GFF2337 0.22 +0.2 386,829 + GFF2337 0.22 -0.5 386,830 - GFF2337 0.22 -2.7
Or see this region's nucleotide sequence