Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2291 and GFF2292 are separated by 16 nucleotides GFF2292 and GFF2293 are separated by 136 nucleotides GFF2293 and GFF2294 are separated by 31 nucleotides GFF2294 and GFF2295 are separated by 22 nucleotides
GFF2291 - Nodulation protein N-related dehydratase, at 346,728 to 347,189
GFF2291
GFF2292 - hypothetical protein, at 347,206 to 347,499
GFF2292
GFF2293 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 347,636 to 348,097
GFF2293
GFF2294 - Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy, at 348,129 to 348,854
GFF2294
GFF2295 - Malonyl-[acyl-carrier protein] O-methyltransferase (EC 2.1.1.197), at 348,877 to 349,791
GFF2295
Position (kb) 348
349 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 347.207 kb on + strand at 347.207 kb on + strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.208 kb on - strand at 347.234 kb on + strand at 347.234 kb on + strand at 347.235 kb on - strand at 347.235 kb on - strand at 347.946 kb on + strand, within GFF2293 at 347.946 kb on + strand, within GFF2293 at 347.946 kb on + strand, within GFF2293 at 347.946 kb on + strand, within GFF2293 at 347.947 kb on - strand, within GFF2293 at 347.947 kb on - strand, within GFF2293 at 348.041 kb on + strand, within GFF2293 at 348.041 kb on + strand, within GFF2293 at 348.041 kb on + strand, within GFF2293 at 348.041 kb on + strand, within GFF2293 at 348.042 kb on - strand, within GFF2293 at 348.171 kb on - strand at 348.171 kb on - strand at 348.607 kb on + strand, within GFF2294 at 348.607 kb on + strand, within GFF2294 at 348.607 kb on + strand, within GFF2294 at 348.607 kb on + strand, within GFF2294 at 348.607 kb on + strand, within GFF2294 at 348.607 kb on + strand, within GFF2294 at 348.608 kb on - strand, within GFF2294 at 348.608 kb on - strand, within GFF2294 at 348.608 kb on - strand, within GFF2294 at 348.608 kb on - strand, within GFF2294 at 348.608 kb on - strand, within GFF2294 at 348.608 kb on - strand, within GFF2294 at 348.608 kb on - strand, within GFF2294 at 348.608 kb on - strand, within GFF2294 at 348.608 kb on - strand, within GFF2294 at 348.608 kb on - strand, within GFF2294 at 348.608 kb on - strand, within GFF2294 at 348.862 kb on + strand at 348.862 kb on + strand at 348.862 kb on + strand at 348.862 kb on + strand at 348.862 kb on + strand at 348.862 kb on + strand at 348.863 kb on - strand at 348.863 kb on - strand at 348.863 kb on - strand at 348.863 kb on - strand at 348.863 kb on - strand at 348.863 kb on - strand at 348.864 kb on + strand at 348.864 kb on + strand at 348.864 kb on + strand at 348.864 kb on + strand at 348.864 kb on + strand at 348.864 kb on + strand at 348.865 kb on - strand at 348.865 kb on - strand at 348.865 kb on - strand at 348.865 kb on - strand at 349.844 kb on + strand at 349.844 kb on + strand at 349.844 kb on + strand at 349.844 kb on + strand at 349.844 kb on + strand at 349.845 kb on - strand at 349.845 kb on - strand at 349.845 kb on - strand at 349.845 kb on - strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.847 kb on + strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.848 kb on - strand at 349.850 kb on + strand at 349.850 kb on + strand at 349.850 kb on + strand at 349.850 kb on + strand at 349.850 kb on + strand at 349.850 kb on - strand at 349.851 kb on - strand at 349.851 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 347,207 + -0.1 347,207 + -1.4 347,208 - -0.2 347,208 - -1.4 347,208 - -2.2 347,208 - +0.2 347,208 - -2.1 347,208 - -1.0 347,208 - -0.5 347,208 - -0.8 347,208 - -0.1 347,208 - -0.1 347,208 - +2.0 347,208 - -1.5 347,234 + -0.5 347,234 + +1.7 347,235 - -1.4 347,235 - +0.3 347,946 + GFF2293 0.67 -0.1 347,946 + GFF2293 0.67 +2.3 347,946 + GFF2293 0.67 +1.5 347,946 + GFF2293 0.67 -2.6 347,947 - GFF2293 0.67 -1.2 347,947 - GFF2293 0.67 -1.0 348,041 + GFF2293 0.88 -1.2 348,041 + GFF2293 0.88 -2.0 348,041 + GFF2293 0.88 -1.5 348,041 + GFF2293 0.88 -0.7 348,042 - GFF2293 0.88 +0.2 348,171 - -0.1 348,171 - -0.5 348,607 + GFF2294 0.66 +1.8 348,607 + GFF2294 0.66 -0.1 348,607 + GFF2294 0.66 -0.5 348,607 + GFF2294 0.66 -0.8 348,607 + GFF2294 0.66 -2.1 348,607 + GFF2294 0.66 +0.2 348,608 - GFF2294 0.66 +1.3 348,608 - GFF2294 0.66 -2.2 348,608 - GFF2294 0.66 -1.2 348,608 - GFF2294 0.66 -1.2 348,608 - GFF2294 0.66 -2.7 348,608 - GFF2294 0.66 -0.8 348,608 - GFF2294 0.66 -1.4 348,608 - GFF2294 0.66 -0.9 348,608 - GFF2294 0.66 -0.1 348,608 - GFF2294 0.66 -1.0 348,608 - GFF2294 0.66 -0.8 348,862 + +0.3 348,862 + -0.2 348,862 + +1.8 348,862 + -3.3 348,862 + +0.4 348,862 + -0.4 348,863 - +0.0 348,863 - -2.3 348,863 - -0.8 348,863 - -0.8 348,863 - -1.1 348,863 - -2.9 348,864 + -1.2 348,864 + +1.2 348,864 + -0.2 348,864 + -2.5 348,864 + -1.5 348,864 + -3.9 348,865 - +1.5 348,865 - -0.8 348,865 - +0.4 348,865 - +1.6 349,844 + -1.7 349,844 + -0.5 349,844 + +0.4 349,844 + -1.2 349,844 + +0.4 349,845 - +1.0 349,845 - -0.7 349,845 - +0.1 349,845 - -0.3 349,847 + +0.6 349,847 + -1.2 349,847 + +1.4 349,847 + +1.2 349,847 + +0.4 349,847 + +0.3 349,847 + +1.1 349,847 + -0.2 349,847 + +0.8 349,847 + -4.0 349,847 + -1.2 349,847 + -0.5 349,847 + +2.2 349,847 + -3.4 349,847 + -0.4 349,848 - +1.8 349,848 - -1.1 349,848 - +1.0 349,848 - +1.2 349,848 - -0.9 349,848 - -0.8 349,848 - -0.6 349,848 - +0.2 349,848 - +1.1 349,848 - +0.4 349,848 - -0.5 349,848 - -1.2 349,848 - +1.8 349,848 - +0.3 349,850 + -1.4 349,850 + +0.0 349,850 + +1.0 349,850 + +3.1 349,850 + +1.2 349,850 - -3.0 349,851 - +1.4 349,851 - -0.9
Or see this region's nucleotide sequence