Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2278 and GFF2279 are separated by 1 nucleotides GFF2279 and GFF2280 are separated by 31 nucleotides
GFF2278 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 331,897 to 333,711
GFF2278
GFF2279 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 333,713 to 334,753
GFF2279
GFF2280 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 334,785 to 335,921
GFF2280
Position (kb) 333
334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 332.765 kb on + strand, within GFF2278 at 332.766 kb on - strand, within GFF2278 at 332.766 kb on - strand, within GFF2278 at 332.810 kb on + strand, within GFF2278 at 332.811 kb on - strand, within GFF2278 at 332.811 kb on - strand, within GFF2278 at 333.195 kb on - strand, within GFF2278 at 333.195 kb on - strand, within GFF2278 at 333.263 kb on + strand, within GFF2278 at 333.263 kb on + strand, within GFF2278 at 333.264 kb on - strand, within GFF2278 at 333.296 kb on + strand, within GFF2278 at 333.296 kb on + strand, within GFF2278 at 333.297 kb on - strand, within GFF2278 at 333.297 kb on - strand, within GFF2278 at 333.297 kb on - strand, within GFF2278 at 333.299 kb on + strand, within GFF2278 at 333.299 kb on + strand, within GFF2278 at 333.338 kb on + strand, within GFF2278 at 333.338 kb on + strand, within GFF2278 at 333.339 kb on - strand, within GFF2278 at 333.452 kb on + strand, within GFF2278 at 333.464 kb on + strand, within GFF2278 at 333.465 kb on - strand, within GFF2278 at 333.465 kb on - strand, within GFF2278 at 333.465 kb on - strand, within GFF2278 at 333.554 kb on + strand at 333.555 kb on - strand at 333.555 kb on - strand at 333.555 kb on - strand at 333.566 kb on + strand at 333.566 kb on + strand at 333.567 kb on - strand at 333.567 kb on - strand at 333.567 kb on - strand at 333.870 kb on + strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 334.090 kb on - strand, within GFF2279 at 334.326 kb on + strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.614 kb on + strand, within GFF2279 at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.696 kb on - strand at 334.696 kb on - strand at 334.696 kb on - strand at 334.786 kb on + strand at 334.787 kb on - strand at 334.787 kb on - strand at 334.847 kb on - strand at 334.858 kb on + strand at 335.051 kb on - strand, within GFF2280 at 335.051 kb on - strand, within GFF2280 at 335.216 kb on - strand, within GFF2280 at 335.216 kb on - strand, within GFF2280 at 335.231 kb on - strand, within GFF2280 at 335.231 kb on - strand, within GFF2280 at 335.444 kb on + strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.447 kb on - strand, within GFF2280 at 335.447 kb on - strand, within GFF2280 at 335.504 kb on - strand, within GFF2280
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 332,765 + GFF2278 0.48 -1.2 332,766 - GFF2278 0.48 +0.9 332,766 - GFF2278 0.48 -0.6 332,810 + GFF2278 0.50 +1.3 332,811 - GFF2278 0.50 +0.1 332,811 - GFF2278 0.50 -0.9 333,195 - GFF2278 0.72 -0.0 333,195 - GFF2278 0.72 -0.2 333,263 + GFF2278 0.75 -0.5 333,263 + GFF2278 0.75 -0.5 333,264 - GFF2278 0.75 +0.3 333,296 + GFF2278 0.77 +0.2 333,296 + GFF2278 0.77 -0.8 333,297 - GFF2278 0.77 -0.3 333,297 - GFF2278 0.77 -2.1 333,297 - GFF2278 0.77 +1.2 333,299 + GFF2278 0.77 -1.4 333,299 + GFF2278 0.77 +0.4 333,338 + GFF2278 0.79 -0.4 333,338 + GFF2278 0.79 -1.9 333,339 - GFF2278 0.79 -0.8 333,452 + GFF2278 0.86 +3.2 333,464 + GFF2278 0.86 +1.6 333,465 - GFF2278 0.86 -0.3 333,465 - GFF2278 0.86 +0.4 333,465 - GFF2278 0.86 +0.1 333,554 + -0.2 333,555 - -3.1 333,555 - -2.2 333,555 - -0.8 333,566 + +0.0 333,566 + -2.5 333,567 - -0.4 333,567 - +0.6 333,567 - -0.2 333,870 + GFF2279 0.15 +0.1 333,937 - GFF2279 0.22 -1.8 333,937 - GFF2279 0.22 -0.3 333,937 - GFF2279 0.22 -0.5 334,090 - GFF2279 0.36 -0.1 334,326 + GFF2279 0.59 -1.9 334,327 - GFF2279 0.59 +0.8 334,327 - GFF2279 0.59 -0.5 334,327 - GFF2279 0.59 +0.4 334,614 + GFF2279 0.87 -1.0 334,695 + -2.8 334,695 + -2.3 334,695 + +0.5 334,695 + -0.9 334,695 + -1.0 334,696 - +0.5 334,696 - +0.8 334,696 - +0.1 334,786 + +0.6 334,787 - +1.8 334,787 - +0.2 334,847 - -2.5 334,858 + -2.0 335,051 - GFF2280 0.23 -3.1 335,051 - GFF2280 0.23 +0.2 335,216 - GFF2280 0.38 +0.8 335,216 - GFF2280 0.38 -1.2 335,231 - GFF2280 0.39 +1.0 335,231 - GFF2280 0.39 -2.0 335,444 + GFF2280 0.58 -1.4 335,445 - GFF2280 0.58 -0.3 335,445 - GFF2280 0.58 +3.0 335,445 - GFF2280 0.58 +0.1 335,447 - GFF2280 0.58 +0.8 335,447 - GFF2280 0.58 -2.2 335,504 - GFF2280 0.63 +0.5
Or see this region's nucleotide sequence