Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2148 and GFF2149 overlap by 1 nucleotides GFF2149 and GFF2150 are separated by 129 nucleotides GFF2150 and GFF2151 are separated by 84 nucleotides GFF2151 and GFF2152 overlap by 1 nucleotides
GFF2148 - Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8), at 196,694 to 197,974
GFF2148
GFF2149 - Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7), at 197,974 to 198,936
GFF2149
GFF2150 - Rubredoxin, at 199,066 to 199,218
GFF2150
GFF2151 - twitching motility protein PilG, at 199,303 to 199,701
GFF2151
GFF2152 - twitching motility protein PilH, at 199,701 to 200,066
GFF2152
Position (kb) 197
198
199 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 198.128 kb on + strand, within GFF2149 at 198.128 kb on + strand, within GFF2149 at 198.129 kb on - strand, within GFF2149 at 198.129 kb on - strand, within GFF2149 at 198.129 kb on - strand, within GFF2149 at 198.129 kb on - strand, within GFF2149 at 198.129 kb on - strand, within GFF2149 at 198.129 kb on - strand, within GFF2149 at 198.129 kb on - strand, within GFF2149 at 198.129 kb on - strand, within GFF2149 at 198.129 kb on - strand, within GFF2149 at 198.129 kb on - strand, within GFF2149 at 198.242 kb on + strand, within GFF2149 at 198.243 kb on - strand, within GFF2149 at 198.243 kb on - strand, within GFF2149 at 198.260 kb on - strand, within GFF2149 at 198.260 kb on - strand, within GFF2149 at 198.329 kb on + strand, within GFF2149 at 198.329 kb on + strand, within GFF2149 at 198.330 kb on - strand, within GFF2149 at 198.330 kb on - strand, within GFF2149 at 198.436 kb on + strand, within GFF2149 at 198.485 kb on + strand, within GFF2149 at 198.485 kb on + strand, within GFF2149 at 198.485 kb on + strand, within GFF2149 at 198.486 kb on - strand, within GFF2149 at 198.486 kb on - strand, within GFF2149 at 198.486 kb on - strand, within GFF2149 at 198.504 kb on - strand, within GFF2149 at 198.530 kb on + strand, within GFF2149 at 198.530 kb on + strand, within GFF2149 at 198.530 kb on + strand, within GFF2149 at 198.530 kb on + strand, within GFF2149 at 198.530 kb on + strand, within GFF2149 at 198.530 kb on + strand, within GFF2149 at 198.530 kb on + strand, within GFF2149 at 198.530 kb on + strand, within GFF2149 at 198.530 kb on + strand, within GFF2149 at 198.530 kb on + strand, within GFF2149 at 198.530 kb on + strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.531 kb on - strand, within GFF2149 at 198.720 kb on - strand, within GFF2149 at 198.885 kb on + strand at 198.885 kb on + strand at 198.885 kb on + strand at 198.885 kb on + strand at 198.886 kb on - strand at 198.910 kb on - strand at 198.910 kb on - strand at 198.910 kb on - strand at 198.922 kb on + strand at 198.922 kb on + strand at 198.922 kb on + strand at 198.922 kb on + strand at 198.922 kb on + strand at 198.922 kb on + strand at 198.922 kb on + strand at 198.922 kb on + strand at 198.922 kb on + strand at 198.922 kb on + strand at 198.922 kb on + strand at 198.923 kb on - strand at 198.923 kb on - strand at 198.923 kb on - strand at 198.923 kb on - strand at 198.923 kb on - strand at 198.923 kb on - strand at 198.927 kb on - strand at 198.927 kb on - strand at 198.927 kb on - strand at 198.927 kb on - strand at 198.927 kb on - strand at 198.927 kb on - strand at 198.927 kb on - strand at 198.927 kb on - strand at 198.927 kb on - strand at 198.927 kb on - strand at 198.927 kb on - strand at 198.927 kb on - strand at 198.936 kb on + strand at 198.936 kb on + strand at 198.936 kb on + strand at 198.937 kb on - strand at 198.937 kb on - strand at 198.937 kb on - strand at 198.937 kb on - strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.968 kb on - strand at 198.968 kb on - strand at 198.968 kb on - strand at 198.968 kb on - strand at 198.980 kb on + strand at 198.981 kb on - strand at 198.981 kb on - strand at 198.981 kb on - strand at 198.981 kb on - strand at 198.981 kb on - strand at 198.991 kb on - strand at 198.998 kb on + strand at 198.998 kb on + strand at 198.998 kb on + strand at 198.998 kb on + strand at 198.998 kb on + strand at 198.999 kb on - strand at 198.999 kb on - strand at 199.004 kb on + strand at 199.004 kb on + strand at 199.005 kb on - strand at 199.005 kb on - strand at 199.005 kb on - strand at 199.005 kb on - strand at 199.008 kb on + strand at 199.008 kb on + strand at 199.008 kb on + strand at 199.008 kb on + strand at 199.008 kb on + strand at 199.008 kb on + strand at 199.009 kb on - strand at 199.009 kb on - strand at 199.009 kb on - strand at 199.009 kb on - strand at 199.023 kb on + strand at 199.024 kb on - strand at 199.039 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.229 kb on + strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.230 kb on - strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.233 kb on + strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.234 kb on - strand at 199.239 kb on + strand at 199.239 kb on + strand at 199.239 kb on + strand at 199.239 kb on + strand at 199.239 kb on + strand at 199.240 kb on - strand at 199.240 kb on - strand at 199.240 kb on - strand at 199.240 kb on - strand at 199.240 kb on - strand at 199.240 kb on - strand at 199.324 kb on + strand at 199.324 kb on + strand at 199.324 kb on + strand at 199.325 kb on - strand at 199.325 kb on - strand at 199.501 kb on + strand, within GFF2151 at 199.501 kb on + strand, within GFF2151 at 199.502 kb on - strand, within GFF2151 at 199.502 kb on - strand, within GFF2151 at 199.580 kb on + strand, within GFF2151 at 199.580 kb on + strand, within GFF2151 at 199.580 kb on + strand, within GFF2151 at 199.580 kb on + strand, within GFF2151 at 199.580 kb on + strand, within GFF2151 at 199.580 kb on + strand, within GFF2151 at 199.581 kb on - strand, within GFF2151 at 199.581 kb on - strand, within GFF2151 at 199.581 kb on - strand, within GFF2151 at 199.581 kb on - strand, within GFF2151 at 199.581 kb on - strand, within GFF2151 at 199.581 kb on - strand, within GFF2151 at 199.581 kb on - strand, within GFF2151 at 199.581 kb on - strand, within GFF2151 at 199.581 kb on - strand, within GFF2151 at 199.581 kb on - strand, within GFF2151 at 199.621 kb on + strand, within GFF2151 at 199.621 kb on + strand, within GFF2151 at 199.621 kb on + strand, within GFF2151 at 199.621 kb on + strand, within GFF2151 at 199.621 kb on + strand, within GFF2151 at 199.621 kb on + strand, within GFF2151 at 199.622 kb on - strand, within GFF2151 at 199.622 kb on - strand, within GFF2151 at 199.622 kb on - strand, within GFF2151 at 199.622 kb on - strand, within GFF2151 at 199.622 kb on - strand, within GFF2151 at 199.622 kb on - strand, within GFF2151 at 199.622 kb on - strand, within GFF2151 at 199.699 kb on + strand at 199.699 kb on + strand at 199.699 kb on + strand at 199.699 kb on + strand at 199.700 kb on - strand at 199.700 kb on - strand at 199.923 kb on + strand, within GFF2152 at 199.923 kb on + strand, within GFF2152 at 199.923 kb on + strand, within GFF2152 at 199.923 kb on + strand, within GFF2152 at 199.923 kb on + strand, within GFF2152 at 199.923 kb on + strand, within GFF2152 at 199.923 kb on + strand, within GFF2152 at 199.923 kb on + strand, within GFF2152 at 199.924 kb on - strand, within GFF2152 at 199.924 kb on - strand, within GFF2152 at 199.924 kb on - strand, within GFF2152 at 199.924 kb on - strand, within GFF2152 at 199.924 kb on - strand, within GFF2152 at 199.924 kb on - strand, within GFF2152 at 199.924 kb on - strand, within GFF2152 at 199.931 kb on + strand, within GFF2152
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 198,128 + GFF2149 0.16 -3.5 198,128 + GFF2149 0.16 -0.1 198,129 - GFF2149 0.16 -3.6 198,129 - GFF2149 0.16 -0.0 198,129 - GFF2149 0.16 +0.1 198,129 - GFF2149 0.16 -0.1 198,129 - GFF2149 0.16 -0.1 198,129 - GFF2149 0.16 -0.1 198,129 - GFF2149 0.16 +1.0 198,129 - GFF2149 0.16 -0.7 198,129 - GFF2149 0.16 +0.5 198,129 - GFF2149 0.16 +0.9 198,242 + GFF2149 0.28 -1.9 198,243 - GFF2149 0.28 -0.9 198,243 - GFF2149 0.28 -1.4 198,260 - GFF2149 0.30 -0.1 198,260 - GFF2149 0.30 -3.9 198,329 + GFF2149 0.37 -1.6 198,329 + GFF2149 0.37 -0.3 198,330 - GFF2149 0.37 -2.6 198,330 - GFF2149 0.37 +0.9 198,436 + GFF2149 0.48 -1.2 198,485 + GFF2149 0.53 -0.4 198,485 + GFF2149 0.53 +1.1 198,485 + GFF2149 0.53 -3.3 198,486 - GFF2149 0.53 -0.8 198,486 - GFF2149 0.53 -1.8 198,486 - GFF2149 0.53 -0.0 198,504 - GFF2149 0.55 -0.7 198,530 + GFF2149 0.58 -0.8 198,530 + GFF2149 0.58 -1.6 198,530 + GFF2149 0.58 -0.0 198,530 + GFF2149 0.58 -0.4 198,530 + GFF2149 0.58 +0.1 198,530 + GFF2149 0.58 -1.2 198,530 + GFF2149 0.58 +0.3 198,530 + GFF2149 0.58 -1.3 198,530 + GFF2149 0.58 -0.1 198,530 + GFF2149 0.58 -0.1 198,530 + GFF2149 0.58 -0.8 198,531 - GFF2149 0.58 -0.3 198,531 - GFF2149 0.58 -0.3 198,531 - GFF2149 0.58 -1.6 198,531 - GFF2149 0.58 +1.3 198,531 - GFF2149 0.58 +1.6 198,531 - GFF2149 0.58 -3.0 198,531 - GFF2149 0.58 -0.1 198,531 - GFF2149 0.58 -2.4 198,531 - GFF2149 0.58 -1.7 198,531 - GFF2149 0.58 -2.8 198,531 - GFF2149 0.58 -1.1 198,531 - GFF2149 0.58 -0.6 198,531 - GFF2149 0.58 +0.3 198,720 - GFF2149 0.77 -0.3 198,885 + -1.1 198,885 + -1.7 198,885 + -2.8 198,885 + -2.7 198,886 - -2.1 198,910 - -1.9 198,910 - +1.9 198,910 - -2.4 198,922 + -0.1 198,922 + -2.7 198,922 + -0.0 198,922 + -1.1 198,922 + -0.9 198,922 + +0.7 198,922 + -2.9 198,922 + -2.0 198,922 + -1.4 198,922 + +0.3 198,922 + -3.3 198,923 - +1.6 198,923 - -0.8 198,923 - -0.7 198,923 - -1.6 198,923 - +1.9 198,923 - -1.5 198,927 - +0.9 198,927 - -2.9 198,927 - +0.9 198,927 - +0.9 198,927 - +0.9 198,927 - +1.9 198,927 - +0.9 198,927 - +2.3 198,927 - -0.9 198,927 - +1.9 198,927 - +0.6 198,927 - +1.9 198,936 + -0.3 198,936 + -0.1 198,936 + -2.7 198,937 - -1.3 198,937 - -1.1 198,937 - -2.1 198,937 - +0.9 198,967 + +0.4 198,967 + +0.5 198,968 - -2.0 198,968 - -0.1 198,968 - +0.9 198,968 - -0.7 198,980 + +4.2 198,981 - -0.9 198,981 - +1.9 198,981 - +1.9 198,981 - -1.7 198,981 - -0.4 198,991 - -0.1 198,998 + -1.7 198,998 + -1.6 198,998 + -0.1 198,998 + -1.4 198,998 + -0.7 198,999 - -1.4 198,999 - +1.9 199,004 + -0.2 199,004 + -2.4 199,005 - -2.4 199,005 - -0.9 199,005 - -1.3 199,005 - -0.7 199,008 + -0.2 199,008 + +0.9 199,008 + -1.1 199,008 + -0.2 199,008 + -1.3 199,008 + +0.4 199,009 - -1.5 199,009 - -0.4 199,009 - -0.8 199,009 - -2.1 199,023 + -2.0 199,024 - +0.3 199,039 + -0.4 199,229 + -0.1 199,229 + -1.4 199,229 + +1.8 199,229 + -0.8 199,229 + -2.4 199,229 + +0.1 199,229 + +1.5 199,229 + +1.0 199,229 + -2.8 199,229 + +1.3 199,229 + +0.9 199,229 + +0.2 199,229 + +0.3 199,229 + -2.4 199,229 + -2.1 199,229 + -1.7 199,229 + -2.7 199,229 + -1.3 199,229 + -2.1 199,229 + -3.5 199,230 - -0.4 199,230 - +0.1 199,230 - +0.0 199,230 - -0.1 199,230 - +0.9 199,230 - +0.1 199,230 - -0.4 199,230 - -0.1 199,230 - -0.9 199,230 - +1.5 199,230 - -0.5 199,230 - +1.4 199,230 - +1.3 199,230 - -0.4 199,233 + -2.3 199,233 + -1.3 199,233 + -1.1 199,233 + -0.1 199,233 + -0.8 199,233 + +0.4 199,233 + +1.4 199,233 + -0.1 199,233 + +0.3 199,233 + -0.8 199,233 + -2.4 199,233 + -1.6 199,233 + +0.8 199,233 + -0.7 199,233 + +0.2 199,233 + -0.4 199,233 + +0.5 199,233 + -1.0 199,233 + -3.3 199,233 + +0.3 199,234 - +0.3 199,234 - -0.5 199,234 - +2.1 199,234 - +1.1 199,234 - -0.4 199,234 - +3.1 199,234 - -0.7 199,234 - -0.4 199,234 - +2.2 199,234 - -1.0 199,234 - -1.9 199,234 - -1.4 199,234 - +0.6 199,234 - -1.3 199,234 - -1.6 199,234 - +0.3 199,234 - -0.0 199,234 - -2.4 199,234 - -0.3 199,234 - -0.3 199,234 - -0.4 199,234 - -0.7 199,234 - +4.6 199,234 - -3.0 199,234 - -3.3 199,239 + -1.8 199,239 + -2.9 199,239 + -0.2 199,239 + -1.1 199,239 + +0.6 199,240 - +1.9 199,240 - -0.0 199,240 - -3.8 199,240 - -0.1 199,240 - -0.1 199,240 - +1.9 199,324 + +0.4 199,324 + +1.1 199,324 + -0.3 199,325 - -3.7 199,325 - -3.2 199,501 + GFF2151 0.50 +1.8 199,501 + GFF2151 0.50 -2.4 199,502 - GFF2151 0.50 -1.5 199,502 - GFF2151 0.50 -0.4 199,580 + GFF2151 0.69 -0.4 199,580 + GFF2151 0.69 +0.9 199,580 + GFF2151 0.69 +2.0 199,580 + GFF2151 0.69 +0.4 199,580 + GFF2151 0.69 +1.5 199,580 + GFF2151 0.69 +1.3 199,581 - GFF2151 0.70 -0.9 199,581 - GFF2151 0.70 +2.0 199,581 - GFF2151 0.70 -1.0 199,581 - GFF2151 0.70 +0.9 199,581 - GFF2151 0.70 +0.5 199,581 - GFF2151 0.70 -0.9 199,581 - GFF2151 0.70 -0.5 199,581 - GFF2151 0.70 -0.4 199,581 - GFF2151 0.70 -0.0 199,581 - GFF2151 0.70 -0.6 199,621 + GFF2151 0.80 -0.5 199,621 + GFF2151 0.80 +0.6 199,621 + GFF2151 0.80 -4.1 199,621 + GFF2151 0.80 -1.2 199,621 + GFF2151 0.80 +0.8 199,621 + GFF2151 0.80 -0.4 199,622 - GFF2151 0.80 +1.0 199,622 - GFF2151 0.80 -1.4 199,622 - GFF2151 0.80 -1.7 199,622 - GFF2151 0.80 -0.6 199,622 - GFF2151 0.80 -0.4 199,622 - GFF2151 0.80 +0.8 199,622 - GFF2151 0.80 -0.7 199,699 + -1.2 199,699 + -0.2 199,699 + +0.4 199,699 + -2.3 199,700 - -1.1 199,700 - -2.7 199,923 + GFF2152 0.61 -4.4 199,923 + GFF2152 0.61 -1.4 199,923 + GFF2152 0.61 -0.7 199,923 + GFF2152 0.61 -1.1 199,923 + GFF2152 0.61 -1.1 199,923 + GFF2152 0.61 -1.9 199,923 + GFF2152 0.61 -0.4 199,923 + GFF2152 0.61 -1.1 199,924 - GFF2152 0.61 -1.6 199,924 - GFF2152 0.61 -1.4 199,924 - GFF2152 0.61 +0.2 199,924 - GFF2152 0.61 +1.0 199,924 - GFF2152 0.61 -2.1 199,924 - GFF2152 0.61 +2.5 199,924 - GFF2152 0.61 -1.1 199,931 + GFF2152 0.63 -0.9
Or see this region's nucleotide sequence