Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1919 and GFF1920 overlap by 4 nucleotides GFF1920 and GFF1921 overlap by 4 nucleotides GFF1921 and GFF1922 overlap by 4 nucleotides
GFF1919 - Rhodanese-related sulfurtransferase, 4 domains, at 598,805 to 600,475
GFF1919
GFF1920 - Cysteine dioxygenase (EC 1.13.11.20), at 600,472 to 601,077
GFF1920
GFF1921 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 601,074 to 602,063
GFF1921
GFF1922 - Acyl-CoA dehydrogenase, at 602,060 to 603,304
GFF1922
Position (kb) 600
601
602 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 599.619 kb on + strand, within GFF1919 at 599.620 kb on - strand, within GFF1919 at 599.620 kb on - strand, within GFF1919 at 599.945 kb on + strand, within GFF1919 at 599.945 kb on + strand, within GFF1919 at 599.945 kb on + strand, within GFF1919 at 599.997 kb on + strand, within GFF1919 at 600.207 kb on + strand, within GFF1919 at 600.271 kb on - strand, within GFF1919 at 600.581 kb on + strand, within GFF1920 at 600.581 kb on + strand, within GFF1920 at 600.581 kb on + strand, within GFF1920 at 600.581 kb on + strand, within GFF1920 at 600.581 kb on + strand, within GFF1920 at 600.582 kb on - strand, within GFF1920 at 600.582 kb on - strand, within GFF1920 at 600.582 kb on - strand, within GFF1920 at 600.582 kb on - strand, within GFF1920 at 600.585 kb on + strand, within GFF1920 at 600.585 kb on + strand, within GFF1920 at 600.585 kb on + strand, within GFF1920 at 600.586 kb on - strand, within GFF1920 at 600.586 kb on - strand, within GFF1920 at 600.586 kb on - strand, within GFF1920 at 600.779 kb on + strand, within GFF1920 at 600.780 kb on - strand, within GFF1920 at 600.914 kb on + strand, within GFF1920 at 601.274 kb on - strand, within GFF1921 at 601.285 kb on + strand, within GFF1921 at 601.286 kb on - strand, within GFF1921 at 601.286 kb on - strand, within GFF1921 at 601.468 kb on + strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.472 kb on - strand, within GFF1921 at 601.472 kb on - strand, within GFF1921 at 601.595 kb on - strand, within GFF1921 at 601.595 kb on - strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.604 kb on - strand, within GFF1921 at 601.604 kb on - strand, within GFF1921 at 601.862 kb on - strand, within GFF1921
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 599,619 + GFF1919 0.49 +0.9 599,620 - GFF1919 0.49 -1.4 599,620 - GFF1919 0.49 -0.5 599,945 + GFF1919 0.68 +0.2 599,945 + GFF1919 0.68 +0.3 599,945 + GFF1919 0.68 +0.3 599,997 + GFF1919 0.71 -1.1 600,207 + GFF1919 0.84 +1.4 600,271 - GFF1919 0.88 -2.7 600,581 + GFF1920 0.18 -2.5 600,581 + GFF1920 0.18 -0.4 600,581 + GFF1920 0.18 +1.7 600,581 + GFF1920 0.18 -2.1 600,581 + GFF1920 0.18 -2.3 600,582 - GFF1920 0.18 +0.0 600,582 - GFF1920 0.18 -2.0 600,582 - GFF1920 0.18 +0.8 600,582 - GFF1920 0.18 -0.9 600,585 + GFF1920 0.19 -0.1 600,585 + GFF1920 0.19 -0.8 600,585 + GFF1920 0.19 +1.1 600,586 - GFF1920 0.19 -2.3 600,586 - GFF1920 0.19 +0.2 600,586 - GFF1920 0.19 -0.7 600,779 + GFF1920 0.51 -1.0 600,780 - GFF1920 0.51 -2.9 600,914 + GFF1920 0.73 -2.6 601,274 - GFF1921 0.20 -0.9 601,285 + GFF1921 0.21 -0.4 601,286 - GFF1921 0.21 +0.5 601,286 - GFF1921 0.21 +0.3 601,468 + GFF1921 0.40 -1.0 601,469 - GFF1921 0.40 +0.6 601,469 - GFF1921 0.40 +1.0 601,469 - GFF1921 0.40 -0.4 601,469 - GFF1921 0.40 +0.2 601,469 - GFF1921 0.40 -3.1 601,472 - GFF1921 0.40 -0.3 601,472 - GFF1921 0.40 -0.4 601,595 - GFF1921 0.53 +0.5 601,595 - GFF1921 0.53 +1.3 601,603 + GFF1921 0.53 -0.1 601,603 + GFF1921 0.53 -1.5 601,603 + GFF1921 0.53 -2.1 601,604 - GFF1921 0.54 -2.0 601,604 - GFF1921 0.54 +0.3 601,862 - GFF1921 0.80 -0.4
Or see this region's nucleotide sequence