Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1802 and GFF1803 are separated by 10 nucleotides GFF1803 and GFF1804 are separated by 137 nucleotides GFF1804 and GFF1805 are separated by 73 nucleotides GFF1805 and GFF1806 are separated by 5 nucleotides
GFF1802 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 465,377 to 466,876
GFF1802
GFF1803 - hypothetical protein, at 466,887 to 467,324
GFF1803
GFF1804 - Uncharacterized UPF0118 membrane protein, at 467,462 to 468,580
GFF1804
GFF1805 - Transcriptional regulator, GntR family, at 468,654 to 469,358
GFF1805
GFF1806 - Na+/H+-dicarboxylate symporter, at 469,364 to 470,707
GFF1806
Position (kb) 467
468
469 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 466.486 kb on - strand, within GFF1802 at 466.537 kb on - strand, within GFF1802 at 466.614 kb on + strand, within GFF1802 at 466.615 kb on - strand, within GFF1802 at 466.615 kb on - strand, within GFF1802 at 466.615 kb on - strand, within GFF1802 at 466.991 kb on - strand, within GFF1803 at 467.069 kb on - strand, within GFF1803 at 467.094 kb on + strand, within GFF1803 at 467.094 kb on + strand, within GFF1803 at 467.176 kb on + strand, within GFF1803 at 467.176 kb on + strand, within GFF1803 at 467.188 kb on + strand, within GFF1803 at 467.188 kb on + strand, within GFF1803 at 467.188 kb on + strand, within GFF1803 at 467.188 kb on + strand, within GFF1803 at 467.189 kb on - strand, within GFF1803 at 467.290 kb on - strand at 467.658 kb on + strand, within GFF1804 at 467.658 kb on + strand, within GFF1804 at 467.658 kb on + strand, within GFF1804 at 467.658 kb on + strand, within GFF1804 at 467.659 kb on - strand, within GFF1804 at 467.659 kb on - strand, within GFF1804 at 467.659 kb on - strand, within GFF1804 at 467.659 kb on - strand, within GFF1804 at 467.659 kb on - strand, within GFF1804 at 467.659 kb on - strand, within GFF1804 at 467.659 kb on - strand, within GFF1804 at 467.784 kb on + strand, within GFF1804 at 467.784 kb on + strand, within GFF1804 at 467.784 kb on + strand, within GFF1804 at 467.784 kb on + strand, within GFF1804 at 467.784 kb on + strand, within GFF1804 at 467.785 kb on - strand, within GFF1804 at 467.785 kb on - strand, within GFF1804 at 467.785 kb on - strand, within GFF1804 at 467.785 kb on - strand, within GFF1804 at 467.785 kb on - strand, within GFF1804 at 467.785 kb on - strand, within GFF1804 at 467.985 kb on + strand, within GFF1804 at 467.985 kb on + strand, within GFF1804 at 467.985 kb on + strand, within GFF1804 at 467.986 kb on - strand, within GFF1804 at 467.986 kb on - strand, within GFF1804 at 467.986 kb on - strand, within GFF1804 at 468.063 kb on + strand, within GFF1804 at 468.064 kb on - strand, within GFF1804 at 468.064 kb on - strand, within GFF1804 at 468.064 kb on - strand, within GFF1804 at 468.072 kb on + strand, within GFF1804 at 468.072 kb on + strand, within GFF1804 at 468.072 kb on + strand, within GFF1804 at 468.072 kb on + strand, within GFF1804 at 468.072 kb on + strand, within GFF1804 at 468.073 kb on - strand, within GFF1804 at 468.073 kb on - strand, within GFF1804 at 468.073 kb on - strand, within GFF1804 at 468.073 kb on - strand, within GFF1804 at 468.267 kb on + strand, within GFF1804 at 468.268 kb on - strand, within GFF1804 at 468.268 kb on - strand, within GFF1804 at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.580 kb on + strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.596 kb on + strand at 468.596 kb on + strand at 468.596 kb on + strand at 468.872 kb on - strand, within GFF1805 at 469.159 kb on + strand, within GFF1805 at 469.159 kb on + strand, within GFF1805 at 469.159 kb on + strand, within GFF1805 at 469.160 kb on - strand, within GFF1805 at 469.160 kb on - strand, within GFF1805 at 469.397 kb on + strand at 469.398 kb on - strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.449 kb on + strand at 469.450 kb on - strand at 469.450 kb on - strand at 469.450 kb on - strand at 469.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 466,486 - GFF1802 0.74 -0.9 466,537 - GFF1802 0.77 -1.2 466,614 + GFF1802 0.82 -2.9 466,615 - GFF1802 0.83 -2.4 466,615 - GFF1802 0.83 -1.4 466,615 - GFF1802 0.83 -1.3 466,991 - GFF1803 0.24 -0.3 467,069 - GFF1803 0.42 -0.2 467,094 + GFF1803 0.47 -0.1 467,094 + GFF1803 0.47 -1.2 467,176 + GFF1803 0.66 -2.4 467,176 + GFF1803 0.66 -1.6 467,188 + GFF1803 0.69 +3.2 467,188 + GFF1803 0.69 -0.1 467,188 + GFF1803 0.69 +1.6 467,188 + GFF1803 0.69 -0.4 467,189 - GFF1803 0.69 -2.7 467,290 - -1.6 467,658 + GFF1804 0.18 +0.7 467,658 + GFF1804 0.18 -2.2 467,658 + GFF1804 0.18 -0.2 467,658 + GFF1804 0.18 +0.9 467,659 - GFF1804 0.18 +3.5 467,659 - GFF1804 0.18 +1.2 467,659 - GFF1804 0.18 +0.5 467,659 - GFF1804 0.18 +0.3 467,659 - GFF1804 0.18 -0.0 467,659 - GFF1804 0.18 -1.1 467,659 - GFF1804 0.18 -1.3 467,784 + GFF1804 0.29 +0.4 467,784 + GFF1804 0.29 -1.4 467,784 + GFF1804 0.29 +1.0 467,784 + GFF1804 0.29 -2.2 467,784 + GFF1804 0.29 +0.6 467,785 - GFF1804 0.29 -2.0 467,785 - GFF1804 0.29 +0.7 467,785 - GFF1804 0.29 -0.4 467,785 - GFF1804 0.29 +0.9 467,785 - GFF1804 0.29 -0.4 467,785 - GFF1804 0.29 -2.8 467,985 + GFF1804 0.47 -1.6 467,985 + GFF1804 0.47 +2.1 467,985 + GFF1804 0.47 +0.6 467,986 - GFF1804 0.47 +0.1 467,986 - GFF1804 0.47 -1.1 467,986 - GFF1804 0.47 +1.5 468,063 + GFF1804 0.54 -1.4 468,064 - GFF1804 0.54 -0.9 468,064 - GFF1804 0.54 +4.7 468,064 - GFF1804 0.54 +1.8 468,072 + GFF1804 0.55 +0.3 468,072 + GFF1804 0.55 -0.4 468,072 + GFF1804 0.55 +0.2 468,072 + GFF1804 0.55 -2.3 468,072 + GFF1804 0.55 +0.5 468,073 - GFF1804 0.55 +0.6 468,073 - GFF1804 0.55 +0.3 468,073 - GFF1804 0.55 -2.4 468,073 - GFF1804 0.55 +0.5 468,267 + GFF1804 0.72 -0.3 468,268 - GFF1804 0.72 +0.7 468,268 - GFF1804 0.72 +0.6 468,580 + -2.4 468,580 + -0.7 468,580 + +0.9 468,580 + +0.8 468,580 + +0.4 468,580 + -0.8 468,580 + -0.2 468,580 + -0.6 468,581 - -1.4 468,581 - -1.8 468,581 - -1.8 468,581 - +0.9 468,581 - +0.8 468,581 - -1.3 468,596 + +2.0 468,596 + +3.5 468,596 + -1.3 468,872 - GFF1805 0.31 -0.9 469,159 + GFF1805 0.72 -1.4 469,159 + GFF1805 0.72 -0.7 469,159 + GFF1805 0.72 +0.9 469,160 - GFF1805 0.72 -0.1 469,160 - GFF1805 0.72 +2.2 469,397 + +1.7 469,398 - -0.3 469,449 + -0.4 469,449 + +0.3 469,449 + +0.9 469,449 + -2.1 469,449 + +0.7 469,449 + -0.7 469,449 + +0.7 469,450 - -1.1 469,450 - +1.6 469,450 - -2.5 469,450 - -1.0
Or see this region's nucleotide sequence