Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1769 and GFF1770 are separated by 90 nucleotides GFF1770 and GFF1771 overlap by 4 nucleotides
GFF1769 - Urease accessory protein UreD, at 431,432 to 432,262
GFF1769
GFF1770 - cytidine/deoxycytidylate deaminase family protein, at 432,353 to 432,880
GFF1770
GFF1771 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 432,877 to 433,914
GFF1771
Position (kb) 432
433 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 431.374 kb on + strand at 431.374 kb on + strand at 431.375 kb on - strand at 431.680 kb on - strand, within GFF1769 at 431.802 kb on + strand, within GFF1769 at 431.803 kb on - strand, within GFF1769 at 431.803 kb on - strand, within GFF1769 at 431.926 kb on - strand, within GFF1769 at 431.926 kb on - strand, within GFF1769 at 431.926 kb on - strand, within GFF1769 at 431.926 kb on - strand, within GFF1769 at 432.175 kb on + strand, within GFF1769 at 432.176 kb on - strand, within GFF1769 at 432.231 kb on + strand at 432.232 kb on - strand at 432.232 kb on - strand at 432.232 kb on - strand at 432.273 kb on + strand at 432.273 kb on + strand at 432.273 kb on + strand at 432.274 kb on - strand at 432.274 kb on - strand at 432.274 kb on - strand at 432.274 kb on - strand at 432.274 kb on - strand at 432.276 kb on + strand at 432.276 kb on + strand at 432.276 kb on + strand at 432.276 kb on + strand at 432.276 kb on + strand at 432.276 kb on + strand at 432.277 kb on - strand at 432.277 kb on - strand at 432.277 kb on - strand at 432.354 kb on + strand at 432.355 kb on - strand at 432.355 kb on - strand at 432.355 kb on - strand at 432.591 kb on + strand, within GFF1770 at 432.591 kb on + strand, within GFF1770 at 432.592 kb on - strand, within GFF1770 at 432.592 kb on - strand, within GFF1770 at 432.592 kb on - strand, within GFF1770 at 432.592 kb on - strand, within GFF1770 at 432.592 kb on - strand, within GFF1770 at 432.846 kb on + strand at 432.846 kb on + strand at 433.012 kb on + strand, within GFF1771 at 433.012 kb on + strand, within GFF1771 at 433.014 kb on + strand, within GFF1771 at 433.015 kb on - strand, within GFF1771 at 433.015 kb on - strand, within GFF1771 at 433.055 kb on + strand, within GFF1771 at 433.055 kb on + strand, within GFF1771 at 433.055 kb on + strand, within GFF1771 at 433.056 kb on - strand, within GFF1771 at 433.274 kb on + strand, within GFF1771 at 433.274 kb on + strand, within GFF1771 at 433.341 kb on - strand, within GFF1771 at 433.571 kb on + strand, within GFF1771 at 433.571 kb on + strand, within GFF1771 at 433.571 kb on + strand, within GFF1771 at 433.571 kb on + strand, within GFF1771 at 433.572 kb on - strand, within GFF1771 at 433.572 kb on - strand, within GFF1771 at 433.574 kb on + strand, within GFF1771 at 433.574 kb on + strand, within GFF1771 at 433.574 kb on + strand, within GFF1771 at 433.574 kb on + strand, within GFF1771 at 433.574 kb on + strand, within GFF1771 at 433.575 kb on - strand, within GFF1771 at 433.575 kb on - strand, within GFF1771 at 433.580 kb on + strand, within GFF1771 at 433.661 kb on + strand, within GFF1771 at 433.662 kb on - strand, within GFF1771 at 433.713 kb on - strand, within GFF1771 at 433.742 kb on + strand, within GFF1771 at 433.742 kb on + strand, within GFF1771 at 433.742 kb on + strand, within GFF1771 at 433.743 kb on - strand, within GFF1771 at 433.743 kb on - strand, within GFF1771 at 433.743 kb on - strand, within GFF1771 at 433.743 kb on - strand, within GFF1771 at 433.746 kb on - strand, within GFF1771 at 433.746 kb on - strand, within GFF1771 at 433.746 kb on - strand, within GFF1771
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 431,374 + +2.2 431,374 + -0.3 431,375 - +1.0 431,680 - GFF1769 0.30 +0.6 431,802 + GFF1769 0.45 -0.9 431,803 - GFF1769 0.45 -2.5 431,803 - GFF1769 0.45 -0.9 431,926 - GFF1769 0.59 -0.6 431,926 - GFF1769 0.59 +0.3 431,926 - GFF1769 0.59 -0.7 431,926 - GFF1769 0.59 -3.1 432,175 + GFF1769 0.89 -2.5 432,176 - GFF1769 0.90 -1.0 432,231 + -1.2 432,232 - -1.1 432,232 - +0.4 432,232 - +0.8 432,273 + -0.5 432,273 + +0.8 432,273 + +0.2 432,274 - +1.4 432,274 - -0.3 432,274 - +0.3 432,274 - -0.4 432,274 - -0.2 432,276 + -1.6 432,276 + -2.9 432,276 + -0.8 432,276 + -4.2 432,276 + +0.3 432,276 + +0.1 432,277 - +0.5 432,277 - +0.5 432,277 - +0.3 432,354 + +0.8 432,355 - +0.5 432,355 - -0.2 432,355 - -1.3 432,591 + GFF1770 0.45 -3.1 432,591 + GFF1770 0.45 -1.0 432,592 - GFF1770 0.45 +0.9 432,592 - GFF1770 0.45 -2.7 432,592 - GFF1770 0.45 +1.6 432,592 - GFF1770 0.45 -0.2 432,592 - GFF1770 0.45 -0.1 432,846 + -2.2 432,846 + -2.8 433,012 + GFF1771 0.13 +0.9 433,012 + GFF1771 0.13 +1.2 433,014 + GFF1771 0.13 -1.0 433,015 - GFF1771 0.13 -1.3 433,015 - GFF1771 0.13 -0.7 433,055 + GFF1771 0.17 +1.3 433,055 + GFF1771 0.17 +1.2 433,055 + GFF1771 0.17 -0.1 433,056 - GFF1771 0.17 -0.2 433,274 + GFF1771 0.38 -0.6 433,274 + GFF1771 0.38 -2.8 433,341 - GFF1771 0.45 +1.2 433,571 + GFF1771 0.67 -1.1 433,571 + GFF1771 0.67 -1.3 433,571 + GFF1771 0.67 +0.2 433,571 + GFF1771 0.67 -0.4 433,572 - GFF1771 0.67 -0.7 433,572 - GFF1771 0.67 -1.7 433,574 + GFF1771 0.67 -2.3 433,574 + GFF1771 0.67 -2.8 433,574 + GFF1771 0.67 +0.8 433,574 + GFF1771 0.67 +0.2 433,574 + GFF1771 0.67 -0.8 433,575 - GFF1771 0.67 -1.5 433,575 - GFF1771 0.67 -0.1 433,580 + GFF1771 0.68 -0.3 433,661 + GFF1771 0.76 +0.9 433,662 - GFF1771 0.76 -0.4 433,713 - GFF1771 0.81 -0.6 433,742 + GFF1771 0.83 +0.1 433,742 + GFF1771 0.83 -2.6 433,742 + GFF1771 0.83 -2.0 433,743 - GFF1771 0.83 -2.7 433,743 - GFF1771 0.83 -1.3 433,743 - GFF1771 0.83 -0.5 433,743 - GFF1771 0.83 -0.3 433,746 - GFF1771 0.84 -1.4 433,746 - GFF1771 0.84 -2.9 433,746 - GFF1771 0.84 +0.9
Or see this region's nucleotide sequence