Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1762 and GFF1763 overlap by 1 nucleotides GFF1763 and GFF1764 overlap by 7 nucleotides GFF1764 and GFF1765 are separated by 88 nucleotides
GFF1762 - no description, at 424,030 to 425,124
GFF1762
GFF1763 - HemK family modification methylase PA2179, at 425,124 to 426,077
GFF1763
GFF1764 - hypothetical protein, at 426,071 to 426,967
GFF1764
GFF1765 - putative membrane protein, at 427,056 to 428,234
GFF1765
Position (kb) 426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 425.126 kb on - strand at 425.191 kb on + strand at 425.192 kb on - strand at 425.192 kb on - strand at 425.242 kb on + strand, within GFF1763 at 425.242 kb on + strand, within GFF1763 at 425.243 kb on - strand, within GFF1763 at 425.243 kb on - strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.330 kb on - strand, within GFF1763 at 425.330 kb on - strand, within GFF1763 at 425.452 kb on + strand, within GFF1763 at 425.453 kb on - strand, within GFF1763 at 425.453 kb on - strand, within GFF1763 at 425.561 kb on - strand, within GFF1763 at 425.791 kb on + strand, within GFF1763 at 426.268 kb on - strand, within GFF1764 at 426.375 kb on + strand, within GFF1764 at 426.375 kb on + strand, within GFF1764 at 426.382 kb on - strand, within GFF1764 at 426.382 kb on - strand, within GFF1764 at 427.044 kb on + strand at 427.045 kb on - strand at 427.045 kb on - strand at 427.888 kb on + strand, within GFF1765 at 427.888 kb on + strand, within GFF1765
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 425,126 - -0.7 425,191 + -3.4 425,192 - -0.5 425,192 - -0.7 425,242 + GFF1763 0.12 +0.9 425,242 + GFF1763 0.12 +0.3 425,243 - GFF1763 0.12 +0.7 425,243 - GFF1763 0.12 +0.3 425,329 + GFF1763 0.21 -1.9 425,329 + GFF1763 0.21 +1.9 425,329 + GFF1763 0.21 +1.4 425,329 + GFF1763 0.21 +1.9 425,329 + GFF1763 0.21 -0.4 425,330 - GFF1763 0.22 +0.3 425,330 - GFF1763 0.22 -0.8 425,452 + GFF1763 0.34 -3.3 425,453 - GFF1763 0.34 -1.4 425,453 - GFF1763 0.34 -2.3 425,561 - GFF1763 0.46 -2.7 425,791 + GFF1763 0.70 +0.8 426,268 - GFF1764 0.22 +0.3 426,375 + GFF1764 0.34 -2.6 426,375 + GFF1764 0.34 +0.6 426,382 - GFF1764 0.35 -0.7 426,382 - GFF1764 0.35 +2.7 427,044 + -0.1 427,045 - +0.9 427,045 - -0.9 427,888 + GFF1765 0.71 -0.3 427,888 + GFF1765 0.71 -2.2
Or see this region's nucleotide sequence