Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1717 and GFF1718 are separated by 157 nucleotides GFF1718 and GFF1719 are separated by 0 nucleotides
GFF1717 - hypothetical protein, at 364,309 to 365,679
GFF1717
GFF1718 - Malate dehydrogenase (EC 1.1.1.37), at 365,837 to 366,760
GFF1718
GFF1719 - Transcriptional regulator, LysR family, at 366,761 to 367,684
GFF1719
Position (kb) 365
366
367 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 365.636 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.776 kb on + strand at 365.776 kb on + strand at 365.777 kb on - strand at 365.777 kb on - strand at 365.795 kb on + strand at 365.942 kb on + strand, within GFF1718 at 365.942 kb on + strand, within GFF1718 at 365.942 kb on + strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 366.098 kb on + strand, within GFF1718 at 366.098 kb on + strand, within GFF1718 at 366.099 kb on - strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.153 kb on - strand, within GFF1718 at 366.153 kb on - strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.249 kb on - strand, within GFF1718 at 366.249 kb on - strand, within GFF1718 at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.758 kb on + strand at 366.758 kb on + strand at 366.758 kb on + strand at 366.759 kb on - strand at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.728 kb on + strand at 367.728 kb on + strand at 367.729 kb on - strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.752 kb on + strand at 367.752 kb on + strand at 367.753 kb on - strand at 367.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 365,636 + +0.9 365,677 + +1.6 365,677 + +2.5 365,677 + -3.0 365,677 + -0.2 365,677 + -1.3 365,677 + +1.1 365,677 + -0.9 365,677 + -1.0 365,677 + -0.4 365,677 + +2.8 365,677 + +0.9 365,677 + -0.8 365,677 + +1.0 365,677 + -0.2 365,677 + -1.3 365,677 + -0.7 365,677 + -0.7 365,677 + +0.7 365,677 + +5.9 365,677 + +0.6 365,678 - +1.0 365,678 - -0.4 365,678 - -0.6 365,678 - -3.6 365,678 - +0.8 365,678 - +1.9 365,678 - -0.5 365,678 - -2.5 365,678 - -3.9 365,678 - +1.9 365,678 - +0.9 365,678 - +0.5 365,678 - +0.9 365,678 - +1.3 365,678 - +2.5 365,678 - +0.1 365,678 - +0.9 365,678 - -1.3 365,678 - -0.7 365,678 - -1.9 365,678 - +1.9 365,678 - -1.1 365,678 - -1.7 365,678 - +0.7 365,678 - -2.6 365,776 + -0.4 365,776 + +0.7 365,777 - -0.4 365,777 - +0.5 365,795 + -0.8 365,942 + GFF1718 0.11 +0.8 365,942 + GFF1718 0.11 -1.9 365,942 + GFF1718 0.11 -0.2 365,943 - GFF1718 0.11 +0.2 365,943 - GFF1718 0.11 -0.2 365,943 - GFF1718 0.11 -1.2 366,098 + GFF1718 0.28 +1.3 366,098 + GFF1718 0.28 -1.3 366,099 - GFF1718 0.28 +0.1 366,131 + GFF1718 0.32 +0.5 366,131 + GFF1718 0.32 -0.5 366,131 + GFF1718 0.32 +0.1 366,131 + GFF1718 0.32 -2.6 366,132 - GFF1718 0.32 +0.2 366,132 - GFF1718 0.32 +0.6 366,132 - GFF1718 0.32 -2.4 366,152 + GFF1718 0.34 -0.4 366,152 + GFF1718 0.34 -1.1 366,152 + GFF1718 0.34 -2.6 366,152 + GFF1718 0.34 -4.3 366,153 - GFF1718 0.34 -1.0 366,153 - GFF1718 0.34 -3.3 366,155 + GFF1718 0.34 +1.1 366,155 + GFF1718 0.34 -0.4 366,155 + GFF1718 0.34 -0.0 366,155 + GFF1718 0.34 -2.6 366,155 + GFF1718 0.34 -3.2 366,155 + GFF1718 0.34 -2.7 366,156 - GFF1718 0.35 +0.5 366,156 - GFF1718 0.35 -1.8 366,156 - GFF1718 0.35 -1.0 366,156 - GFF1718 0.35 +0.6 366,156 - GFF1718 0.35 -0.9 366,156 - GFF1718 0.35 +0.3 366,156 - GFF1718 0.35 -1.8 366,156 - GFF1718 0.35 -3.0 366,248 + GFF1718 0.44 +0.3 366,248 + GFF1718 0.44 -0.1 366,248 + GFF1718 0.44 -0.9 366,248 + GFF1718 0.44 -4.0 366,249 - GFF1718 0.45 -2.4 366,249 - GFF1718 0.45 +0.4 366,673 + -1.8 366,673 + -2.5 366,673 + -0.2 366,673 + -1.2 366,673 + +1.1 366,673 + +1.6 366,673 + +0.9 366,673 + -1.7 366,674 - -0.8 366,674 - -2.9 366,674 - +1.9 366,674 - -1.4 366,758 + +2.3 366,758 + +0.1 366,758 + +1.8 366,759 - +0.1 366,858 + GFF1719 0.10 +0.6 366,858 + GFF1719 0.10 -0.7 366,858 + GFF1719 0.10 +0.6 366,858 + GFF1719 0.10 +0.1 366,858 + GFF1719 0.10 -1.1 366,858 + GFF1719 0.10 -2.9 366,858 + GFF1719 0.10 +1.5 366,858 + GFF1719 0.10 +0.8 366,858 + GFF1719 0.10 -1.3 366,858 + GFF1719 0.10 +0.7 366,858 + GFF1719 0.10 +2.1 366,858 + GFF1719 0.10 -2.8 366,858 + GFF1719 0.10 -3.1 366,858 + GFF1719 0.10 +0.1 366,859 - GFF1719 0.11 -0.5 366,859 - GFF1719 0.11 -3.9 366,859 - GFF1719 0.11 +1.6 366,859 - GFF1719 0.11 +0.3 366,859 - GFF1719 0.11 -0.7 366,859 - GFF1719 0.11 -1.5 366,859 - GFF1719 0.11 +0.1 366,859 - GFF1719 0.11 -1.7 366,859 - GFF1719 0.11 -1.9 367,547 + GFF1719 0.85 -2.4 367,547 + GFF1719 0.85 -0.4 367,547 + GFF1719 0.85 +0.9 367,547 + GFF1719 0.85 +0.3 367,547 + GFF1719 0.85 +1.2 367,547 + GFF1719 0.85 -0.5 367,547 + GFF1719 0.85 +0.1 367,547 + GFF1719 0.85 +0.5 367,547 + GFF1719 0.85 +1.5 367,548 - GFF1719 0.85 -0.0 367,548 - GFF1719 0.85 +0.8 367,548 - GFF1719 0.85 -1.4 367,548 - GFF1719 0.85 -0.9 367,548 - GFF1719 0.85 -2.5 367,548 - GFF1719 0.85 +0.6 367,548 - GFF1719 0.85 -1.8 367,548 - GFF1719 0.85 -0.2 367,548 - GFF1719 0.85 -0.2 367,548 - GFF1719 0.85 +0.8 367,548 - GFF1719 0.85 -0.0 367,548 - GFF1719 0.85 +1.1 367,548 - GFF1719 0.85 -2.8 367,728 + -2.1 367,728 + -0.7 367,729 - +0.1 367,748 + -2.0 367,748 + +0.7 367,748 + -2.5 367,748 + -0.3 367,748 + -0.2 367,748 + -0.2 367,748 + -2.0 367,748 + +0.1 367,749 - -3.1 367,749 - +1.2 367,749 - -1.1 367,749 - +0.5 367,749 - -4.2 367,749 - -3.0 367,749 - +1.4 367,749 - +1.5 367,749 - -1.9 367,752 + -0.9 367,752 + -2.3 367,753 - +3.1 367,753 - +0.2
Or see this region's nucleotide sequence