Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1640 and GFF1641 overlap by 1 nucleotides GFF1641 and GFF1642 are separated by 63 nucleotides GFF1642 and GFF1643 are separated by 4 nucleotides
GFF1640 - Polyketide synthase modules and related proteins, at 271,193 to 278,275
GFF1640
GFF1641 - Polyketide synthase modules and related proteins, at 278,275 to 283,587
GFF1641
GFF1642 - FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis, at 283,651 to 284,391
GFF1642
GFF1643 - MbtH-like NRPS chaperone, at 284,396 to 284,644
GFF1643
Position (kb) 278
279
280
281
282
283
284 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 277.593 kb on + strand at 277.755 kb on + strand at 277.756 kb on - strand at 277.756 kb on - strand at 277.869 kb on + strand at 278.074 kb on - strand at 278.074 kb on - strand at 278.637 kb on - strand at 278.744 kb on + strand at 278.744 kb on + strand at 278.744 kb on + strand at 278.744 kb on + strand at 278.745 kb on - strand at 278.745 kb on - strand at 278.745 kb on - strand at 278.819 kb on + strand, within GFF1641 at 278.820 kb on - strand, within GFF1641 at 278.820 kb on - strand, within GFF1641 at 278.820 kb on - strand, within GFF1641 at 278.967 kb on - strand, within GFF1641 at 279.086 kb on + strand, within GFF1641 at 279.116 kb on + strand, within GFF1641 at 279.116 kb on + strand, within GFF1641 at 279.117 kb on - strand, within GFF1641 at 279.209 kb on + strand, within GFF1641 at 279.209 kb on + strand, within GFF1641 at 279.210 kb on - strand, within GFF1641 at 279.210 kb on - strand, within GFF1641 at 279.425 kb on + strand, within GFF1641 at 279.704 kb on + strand, within GFF1641 at 279.704 kb on + strand, within GFF1641 at 279.704 kb on + strand, within GFF1641 at 279.704 kb on + strand, within GFF1641 at 279.704 kb on + strand, within GFF1641 at 279.704 kb on + strand, within GFF1641 at 279.705 kb on - strand, within GFF1641 at 279.705 kb on - strand, within GFF1641 at 279.705 kb on - strand, within GFF1641 at 279.705 kb on - strand, within GFF1641 at 279.714 kb on - strand, within GFF1641 at 279.714 kb on - strand, within GFF1641 at 279.714 kb on - strand, within GFF1641 at 279.917 kb on + strand, within GFF1641 at 279.918 kb on - strand, within GFF1641 at 279.918 kb on - strand, within GFF1641 at 279.918 kb on - strand, within GFF1641 at 280.006 kb on + strand, within GFF1641 at 280.006 kb on + strand, within GFF1641 at 280.006 kb on + strand, within GFF1641 at 280.007 kb on - strand, within GFF1641 at 280.065 kb on - strand, within GFF1641 at 280.277 kb on + strand, within GFF1641 at 280.278 kb on - strand, within GFF1641 at 280.328 kb on + strand, within GFF1641 at 280.329 kb on - strand, within GFF1641 at 280.329 kb on - strand, within GFF1641 at 280.329 kb on - strand, within GFF1641 at 280.872 kb on - strand, within GFF1641 at 280.949 kb on + strand, within GFF1641 at 281.007 kb on - strand, within GFF1641 at 281.897 kb on + strand, within GFF1641 at 281.897 kb on + strand, within GFF1641 at 281.897 kb on + strand, within GFF1641 at 281.897 kb on + strand, within GFF1641 at 281.897 kb on + strand, within GFF1641 at 281.897 kb on + strand, within GFF1641 at 281.897 kb on + strand, within GFF1641 at 281.898 kb on - strand, within GFF1641 at 281.898 kb on - strand, within GFF1641 at 281.898 kb on - strand, within GFF1641 at 281.898 kb on - strand, within GFF1641 at 281.898 kb on - strand, within GFF1641 at 282.219 kb on - strand, within GFF1641 at 282.255 kb on + strand, within GFF1641 at 282.255 kb on + strand, within GFF1641 at 282.256 kb on - strand, within GFF1641 at 282.256 kb on - strand, within GFF1641 at 282.270 kb on - strand, within GFF1641 at 282.371 kb on + strand, within GFF1641 at 282.626 kb on + strand, within GFF1641 at 282.875 kb on + strand, within GFF1641 at 282.876 kb on - strand, within GFF1641 at 283.085 kb on + strand at 283.085 kb on + strand at 283.085 kb on + strand at 283.085 kb on + strand at 283.085 kb on + strand at 283.085 kb on + strand at 283.086 kb on - strand at 283.086 kb on - strand at 283.340 kb on + strand at 283.367 kb on + strand at 283.367 kb on + strand at 283.367 kb on + strand at 283.368 kb on - strand at 283.368 kb on - strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.333 kb on + strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.334 kb on - strand at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.486 kb on + strand, within GFF1643 at 284.487 kb on - strand, within GFF1643 at 284.487 kb on - strand, within GFF1643 at 284.490 kb on + strand, within GFF1643 at 284.490 kb on + strand, within GFF1643 at 284.491 kb on - strand, within GFF1643 at 284.491 kb on - strand, within GFF1643 at 284.577 kb on + strand, within GFF1643 at 284.577 kb on + strand, within GFF1643 at 284.577 kb on + strand, within GFF1643
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 277,593 + -2.8 277,755 + -0.2 277,756 - +0.1 277,756 - +0.2 277,869 + +0.5 278,074 - -0.5 278,074 - -2.0 278,637 - -1.5 278,744 + +1.5 278,744 + +1.2 278,744 + -2.9 278,744 + +3.0 278,745 - +0.3 278,745 - -0.6 278,745 - +0.6 278,819 + GFF1641 0.10 -1.2 278,820 - GFF1641 0.10 -0.2 278,820 - GFF1641 0.10 +1.4 278,820 - GFF1641 0.10 -0.8 278,967 - GFF1641 0.13 -0.1 279,086 + GFF1641 0.15 -1.0 279,116 + GFF1641 0.16 -1.2 279,116 + GFF1641 0.16 -0.8 279,117 - GFF1641 0.16 -1.5 279,209 + GFF1641 0.18 -0.2 279,209 + GFF1641 0.18 +2.5 279,210 - GFF1641 0.18 +0.1 279,210 - GFF1641 0.18 +1.1 279,425 + GFF1641 0.22 -1.0 279,704 + GFF1641 0.27 -0.7 279,704 + GFF1641 0.27 +0.5 279,704 + GFF1641 0.27 -0.6 279,704 + GFF1641 0.27 +1.6 279,704 + GFF1641 0.27 -0.3 279,704 + GFF1641 0.27 -1.5 279,705 - GFF1641 0.27 -1.8 279,705 - GFF1641 0.27 +1.8 279,705 - GFF1641 0.27 +0.5 279,705 - GFF1641 0.27 -0.5 279,714 - GFF1641 0.27 -1.4 279,714 - GFF1641 0.27 +1.5 279,714 - GFF1641 0.27 +0.4 279,917 + GFF1641 0.31 -1.0 279,918 - GFF1641 0.31 -1.0 279,918 - GFF1641 0.31 +1.4 279,918 - GFF1641 0.31 -0.0 280,006 + GFF1641 0.33 +0.2 280,006 + GFF1641 0.33 -0.7 280,006 + GFF1641 0.33 -1.8 280,007 - GFF1641 0.33 +0.1 280,065 - GFF1641 0.34 +0.9 280,277 + GFF1641 0.38 +0.2 280,278 - GFF1641 0.38 -1.8 280,328 + GFF1641 0.39 +2.0 280,329 - GFF1641 0.39 +0.6 280,329 - GFF1641 0.39 -1.4 280,329 - GFF1641 0.39 +1.6 280,872 - GFF1641 0.49 -4.0 280,949 + GFF1641 0.50 +0.5 281,007 - GFF1641 0.51 -1.2 281,897 + GFF1641 0.68 -0.3 281,897 + GFF1641 0.68 -1.9 281,897 + GFF1641 0.68 +0.0 281,897 + GFF1641 0.68 +1.7 281,897 + GFF1641 0.68 +1.1 281,897 + GFF1641 0.68 +0.8 281,897 + GFF1641 0.68 -0.4 281,898 - GFF1641 0.68 -0.3 281,898 - GFF1641 0.68 +0.5 281,898 - GFF1641 0.68 -1.2 281,898 - GFF1641 0.68 +0.6 281,898 - GFF1641 0.68 -2.2 282,219 - GFF1641 0.74 -2.4 282,255 + GFF1641 0.75 +0.3 282,255 + GFF1641 0.75 -2.1 282,256 - GFF1641 0.75 +1.7 282,256 - GFF1641 0.75 -0.8 282,270 - GFF1641 0.75 -1.2 282,371 + GFF1641 0.77 +3.1 282,626 + GFF1641 0.82 -1.8 282,875 + GFF1641 0.87 +1.5 282,876 - GFF1641 0.87 +1.3 283,085 + -0.2 283,085 + -0.6 283,085 + -4.1 283,085 + +0.2 283,085 + -1.2 283,085 + -0.0 283,086 - -0.6 283,086 - -0.2 283,340 + -1.0 283,367 + +0.0 283,367 + +0.8 283,367 + +0.7 283,368 - -2.0 283,368 - -2.8 284,333 + +1.1 284,333 + +1.8 284,333 + -0.8 284,333 + +0.2 284,333 + +0.6 284,333 + -2.6 284,333 + -2.9 284,334 - +1.8 284,334 - -4.0 284,334 - -0.2 284,334 - +1.6 284,334 - -0.9 284,334 - -0.0 284,334 - +0.4 284,486 + GFF1643 0.36 -0.5 284,486 + GFF1643 0.36 -2.6 284,486 + GFF1643 0.36 -0.9 284,486 + GFF1643 0.36 -3.1 284,486 + GFF1643 0.36 -0.6 284,487 - GFF1643 0.37 +0.2 284,487 - GFF1643 0.37 -0.4 284,490 + GFF1643 0.38 -0.2 284,490 + GFF1643 0.38 +0.0 284,491 - GFF1643 0.38 -2.2 284,491 - GFF1643 0.38 +0.7 284,577 + GFF1643 0.73 -0.1 284,577 + GFF1643 0.73 -1.4 284,577 + GFF1643 0.73 +0.4
Or see this region's nucleotide sequence