Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1637 and GFF1638 overlap by 4 nucleotides GFF1638 and GFF1639 overlap by 4 nucleotides
GFF1637 - Polyketide synthase modules and related proteins, at 260,237 to 264,835
GFF1637
GFF1638 - Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 264,832 to 268,113
GFF1638
GFF1639 - Polyketide synthase modules and related proteins, at 268,110 to 271,196
GFF1639
Position (kb) 264
265
266
267
268
269 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 263.878 kb on - strand, within GFF1637 at 264.319 kb on - strand, within GFF1637 at 264.432 kb on + strand at 264.456 kb on + strand at 264.556 kb on - strand at 265.143 kb on + strand at 265.346 kb on + strand, within GFF1638 at 265.643 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.799 kb on + strand, within GFF1638 at 265.808 kb on + strand, within GFF1638 at 265.809 kb on - strand, within GFF1638 at 266.061 kb on + strand, within GFF1638 at 266.136 kb on - strand, within GFF1638 at 266.232 kb on - strand, within GFF1638 at 266.232 kb on - strand, within GFF1638 at 266.232 kb on - strand, within GFF1638 at 266.405 kb on + strand, within GFF1638 at 266.685 kb on - strand, within GFF1638 at 266.808 kb on - strand, within GFF1638 at 266.858 kb on + strand, within GFF1638 at 266.859 kb on - strand, within GFF1638 at 266.859 kb on - strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 267.244 kb on + strand, within GFF1638 at 267.534 kb on - strand, within GFF1638 at 267.534 kb on - strand, within GFF1638 at 267.543 kb on - strand, within GFF1638 at 267.599 kb on + strand, within GFF1638 at 268.043 kb on + strand at 268.044 kb on - strand at 268.044 kb on - strand at 268.044 kb on - strand at 268.781 kb on - strand, within GFF1639 at 268.781 kb on - strand, within GFF1639 at 268.894 kb on + strand, within GFF1639 at 269.057 kb on - strand, within GFF1639 at 269.057 kb on - strand, within GFF1639 at 269.065 kb on + strand, within GFF1639 at 269.066 kb on - strand, within GFF1639 at 269.070 kb on - strand, within GFF1639
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 263,878 - GFF1637 0.79 -2.3 264,319 - GFF1637 0.89 +2.6 264,432 + -1.6 264,456 + +0.1 264,556 - -2.2 265,143 + -2.3 265,346 + GFF1638 0.16 -2.4 265,643 + GFF1638 0.25 +0.2 265,697 + GFF1638 0.26 -2.0 265,697 + GFF1638 0.26 -1.0 265,697 + GFF1638 0.26 -1.4 265,698 - GFF1638 0.26 -1.1 265,698 - GFF1638 0.26 +0.4 265,698 - GFF1638 0.26 +1.2 265,698 - GFF1638 0.26 -3.7 265,799 + GFF1638 0.29 +0.2 265,808 + GFF1638 0.30 -0.1 265,809 - GFF1638 0.30 -3.1 266,061 + GFF1638 0.37 +0.5 266,136 - GFF1638 0.40 -3.8 266,232 - GFF1638 0.43 -1.3 266,232 - GFF1638 0.43 -1.3 266,232 - GFF1638 0.43 -1.7 266,405 + GFF1638 0.48 +0.1 266,685 - GFF1638 0.56 -0.4 266,808 - GFF1638 0.60 -2.4 266,858 + GFF1638 0.62 -0.4 266,859 - GFF1638 0.62 +0.5 266,859 - GFF1638 0.62 +1.2 266,894 + GFF1638 0.63 -1.2 266,894 + GFF1638 0.63 -1.4 266,894 + GFF1638 0.63 -0.1 266,894 + GFF1638 0.63 -1.3 266,894 + GFF1638 0.63 -0.8 266,894 + GFF1638 0.63 +0.6 267,244 + GFF1638 0.73 -0.2 267,534 - GFF1638 0.82 -3.8 267,534 - GFF1638 0.82 -1.5 267,543 - GFF1638 0.83 +0.8 267,599 + GFF1638 0.84 +0.9 268,043 + -0.8 268,044 - +0.5 268,044 - -0.2 268,044 - +1.0 268,781 - GFF1639 0.22 -2.4 268,781 - GFF1639 0.22 +0.2 268,894 + GFF1639 0.25 -2.0 269,057 - GFF1639 0.31 +0.6 269,057 - GFF1639 0.31 +1.2 269,065 + GFF1639 0.31 +0.9 269,066 - GFF1639 0.31 -0.5 269,070 - GFF1639 0.31 +0.4
Or see this region's nucleotide sequence