Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1569 and GFF1570 are separated by 38 nucleotides GFF1570 and GFF1571 are separated by 104 nucleotides
GFF1569 - BUG/TctC family periplasmic protein, at 169,281 to 170,267
GFF1569
GFF1570 - Muconate cycloisomerase (EC 5.5.1.1), at 170,306 to 171,430
GFF1570
GFF1571 - Transcriptional regulator, LysR family, at 171,535 to 172,404
GFF1571
Position (kb) 170
171
172 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 169.348 kb on + strand at 169.348 kb on + strand at 169.348 kb on + strand at 169.705 kb on + strand, within GFF1569 at 169.706 kb on - strand, within GFF1569 at 169.706 kb on - strand, within GFF1569 at 169.810 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.815 kb on - strand, within GFF1569 at 169.815 kb on - strand, within GFF1569 at 169.815 kb on - strand, within GFF1569 at 169.815 kb on - strand, within GFF1569 at 169.931 kb on - strand, within GFF1569 at 169.931 kb on - strand, within GFF1569 at 170.286 kb on + strand at 170.287 kb on - strand at 170.287 kb on - strand at 170.287 kb on - strand at 170.290 kb on + strand at 170.290 kb on + strand at 170.291 kb on - strand at 170.656 kb on - strand, within GFF1570 at 170.763 kb on + strand, within GFF1570 at 170.764 kb on - strand, within GFF1570 at 170.764 kb on - strand, within GFF1570 at 170.772 kb on + strand, within GFF1570 at 170.773 kb on - strand, within GFF1570 at 170.793 kb on + strand, within GFF1570 at 170.793 kb on + strand, within GFF1570 at 170.794 kb on - strand, within GFF1570 at 170.794 kb on - strand, within GFF1570 at 170.955 kb on + strand, within GFF1570 at 171.004 kb on - strand, within GFF1570 at 171.006 kb on + strand, within GFF1570 at 171.007 kb on - strand, within GFF1570 at 171.022 kb on - strand, within GFF1570 at 171.058 kb on - strand, within GFF1570 at 171.058 kb on - strand, within GFF1570 at 171.058 kb on - strand, within GFF1570 at 171.171 kb on + strand, within GFF1570 at 171.171 kb on + strand, within GFF1570 at 171.172 kb on - strand, within GFF1570 at 171.219 kb on - strand, within GFF1570 at 171.282 kb on + strand, within GFF1570 at 171.282 kb on + strand, within GFF1570 at 171.282 kb on + strand, within GFF1570 at 171.283 kb on - strand, within GFF1570 at 171.526 kb on + strand at 171.527 kb on - strand at 171.662 kb on + strand, within GFF1571 at 171.662 kb on + strand, within GFF1571 at 171.662 kb on + strand, within GFF1571 at 171.662 kb on + strand, within GFF1571 at 171.663 kb on - strand, within GFF1571 at 171.663 kb on - strand, within GFF1571 at 171.663 kb on - strand, within GFF1571 at 171.663 kb on - strand, within GFF1571 at 171.706 kb on - strand, within GFF1571 at 171.741 kb on + strand, within GFF1571 at 171.741 kb on + strand, within GFF1571 at 171.742 kb on - strand, within GFF1571 at 172.106 kb on - strand, within GFF1571 at 172.113 kb on + strand, within GFF1571 at 172.144 kb on + strand, within GFF1571 at 172.144 kb on + strand, within GFF1571 at 172.144 kb on + strand, within GFF1571 at 172.144 kb on + strand, within GFF1571 at 172.145 kb on - strand, within GFF1571 at 172.201 kb on + strand, within GFF1571 at 172.201 kb on + strand, within GFF1571 at 172.201 kb on + strand, within GFF1571 at 172.202 kb on - strand, within GFF1571 at 172.202 kb on - strand, within GFF1571
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 169,348 + -0.5 169,348 + -1.1 169,348 + +0.5 169,705 + GFF1569 0.43 -0.3 169,706 - GFF1569 0.43 -1.6 169,706 - GFF1569 0.43 -3.1 169,810 + GFF1569 0.54 -0.2 169,814 + GFF1569 0.54 -2.3 169,814 + GFF1569 0.54 +0.8 169,814 + GFF1569 0.54 -3.6 169,814 + GFF1569 0.54 +0.0 169,814 + GFF1569 0.54 -3.9 169,814 + GFF1569 0.54 -1.3 169,814 + GFF1569 0.54 -4.4 169,815 - GFF1569 0.54 -3.1 169,815 - GFF1569 0.54 -1.1 169,815 - GFF1569 0.54 -0.8 169,815 - GFF1569 0.54 +1.5 169,931 - GFF1569 0.66 -2.0 169,931 - GFF1569 0.66 -0.8 170,286 + -2.8 170,287 - -0.3 170,287 - -0.3 170,287 - +1.4 170,290 + +0.7 170,290 + -1.3 170,291 - -2.4 170,656 - GFF1570 0.31 -0.3 170,763 + GFF1570 0.41 -0.4 170,764 - GFF1570 0.41 +0.2 170,764 - GFF1570 0.41 +0.8 170,772 + GFF1570 0.41 +0.5 170,773 - GFF1570 0.42 -3.1 170,793 + GFF1570 0.43 +0.7 170,793 + GFF1570 0.43 +0.1 170,794 - GFF1570 0.43 -2.6 170,794 - GFF1570 0.43 +0.2 170,955 + GFF1570 0.58 +1.8 171,004 - GFF1570 0.62 -1.0 171,006 + GFF1570 0.62 -1.2 171,007 - GFF1570 0.62 +1.4 171,022 - GFF1570 0.64 -3.1 171,058 - GFF1570 0.67 -1.3 171,058 - GFF1570 0.67 -0.6 171,058 - GFF1570 0.67 -3.4 171,171 + GFF1570 0.77 +0.3 171,171 + GFF1570 0.77 +1.0 171,172 - GFF1570 0.77 -2.6 171,219 - GFF1570 0.81 -0.2 171,282 + GFF1570 0.87 +1.1 171,282 + GFF1570 0.87 -3.1 171,282 + GFF1570 0.87 -0.3 171,283 - GFF1570 0.87 -1.6 171,526 + -0.1 171,527 - +0.2 171,662 + GFF1571 0.15 +0.0 171,662 + GFF1571 0.15 +0.7 171,662 + GFF1571 0.15 +0.3 171,662 + GFF1571 0.15 +0.8 171,663 - GFF1571 0.15 +0.1 171,663 - GFF1571 0.15 -0.4 171,663 - GFF1571 0.15 -1.1 171,663 - GFF1571 0.15 +0.8 171,706 - GFF1571 0.20 -1.4 171,741 + GFF1571 0.24 -0.2 171,741 + GFF1571 0.24 -0.2 171,742 - GFF1571 0.24 -0.5 172,106 - GFF1571 0.66 -0.4 172,113 + GFF1571 0.66 +0.1 172,144 + GFF1571 0.70 -0.2 172,144 + GFF1571 0.70 -2.7 172,144 + GFF1571 0.70 +0.7 172,144 + GFF1571 0.70 +0.6 172,145 - GFF1571 0.70 +1.2 172,201 + GFF1571 0.77 +0.0 172,201 + GFF1571 0.77 -1.1 172,201 + GFF1571 0.77 +0.9 172,202 - GFF1571 0.77 -3.0 172,202 - GFF1571 0.77 -2.9
Or see this region's nucleotide sequence