Strain Fitness in Variovorax sp. SCN45 around GFF1507

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1506 and GFF1507 are separated by 34 nucleotidesGFF1507 and GFF1508 overlap by 4 nucleotidesGFF1508 and GFF1509 overlap by 4 nucleotides GFF1506 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 97,777 to 99,342 GFF1506 GFF1507 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 99,377 to 101,443 GFF1507 GFF1508 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 101,440 to 102,339 GFF1508 GFF1509 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 102,336 to 103,310 GFF1509 Position (kb) 99 100 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 98.579 kb on + strand, within GFF1506at 98.579 kb on + strand, within GFF1506at 98.579 kb on + strand, within GFF1506at 98.580 kb on - strand, within GFF1506at 98.580 kb on - strand, within GFF1506at 98.580 kb on - strand, within GFF1506at 98.702 kb on + strand, within GFF1506at 98.735 kb on + strand, within GFF1506at 98.736 kb on - strand, within GFF1506at 98.780 kb on + strand, within GFF1506at 98.780 kb on + strand, within GFF1506at 98.781 kb on - strand, within GFF1506at 98.795 kb on + strand, within GFF1506at 98.795 kb on + strand, within GFF1506at 98.796 kb on - strand, within GFF1506at 98.831 kb on + strand, within GFF1506at 98.831 kb on + strand, within GFF1506at 98.832 kb on - strand, within GFF1506at 98.832 kb on - strand, within GFF1506at 98.832 kb on - strand, within GFF1506at 98.876 kb on + strand, within GFF1506at 98.876 kb on + strand, within GFF1506at 98.877 kb on - strand, within GFF1506at 98.987 kb on + strand, within GFF1506at 98.988 kb on - strand, within GFF1506at 98.988 kb on - strand, within GFF1506at 99.391 kb on - strandat 99.391 kb on - strandat 99.391 kb on - strandat 99.597 kb on + strand, within GFF1507at 99.598 kb on - strand, within GFF1507at 99.660 kb on + strand, within GFF1507at 99.660 kb on + strand, within GFF1507at 99.660 kb on + strand, within GFF1507at 99.661 kb on - strand, within GFF1507at 99.661 kb on - strand, within GFF1507at 99.723 kb on + strand, within GFF1507at 99.723 kb on + strand, within GFF1507at 99.723 kb on + strand, within GFF1507at 99.724 kb on - strand, within GFF1507at 99.948 kb on + strand, within GFF1507at 99.948 kb on + strand, within GFF1507at 99.948 kb on + strand, within GFF1507at 99.949 kb on - strand, within GFF1507at 99.949 kb on - strand, within GFF1507at 100.042 kb on - strand, within GFF1507at 100.042 kb on - strand, within GFF1507at 100.668 kb on + strand, within GFF1507at 100.669 kb on - strand, within GFF1507at 100.731 kb on + strand, within GFF1507at 100.731 kb on + strand, within GFF1507at 100.731 kb on + strand, within GFF1507at 100.731 kb on + strand, within GFF1507at 100.731 kb on + strand, within GFF1507at 100.731 kb on + strand, within GFF1507at 100.731 kb on + strand, within GFF1507at 100.732 kb on - strand, within GFF1507at 100.732 kb on - strand, within GFF1507at 101.546 kb on + strand, within GFF1508at 101.547 kb on - strand, within GFF1508at 101.570 kb on + strand, within GFF1508at 101.771 kb on + strand, within GFF1508at 101.771 kb on + strand, within GFF1508at 101.771 kb on + strand, within GFF1508at 101.771 kb on + strand, within GFF1508at 101.820 kb on - strand, within GFF1508at 101.820 kb on - strand, within GFF1508at 101.822 kb on + strand, within GFF1508at 101.822 kb on + strand, within GFF1508at 101.822 kb on + strand, within GFF1508at 101.823 kb on - strand, within GFF1508at 101.879 kb on + strand, within GFF1508at 101.879 kb on + strand, within GFF1508at 101.879 kb on + strand, within GFF1508at 101.879 kb on + strand, within GFF1508at 101.880 kb on - strand, within GFF1508at 101.880 kb on - strand, within GFF1508at 101.880 kb on - strand, within GFF1508at 102.074 kb on + strand, within GFF1508at 102.110 kb on + strand, within GFF1508at 102.111 kb on - strand, within GFF1508at 102.111 kb on - strand, within GFF1508at 102.116 kb on + strand, within GFF1508at 102.116 kb on + strand, within GFF1508at 102.116 kb on + strand, within GFF1508at 102.117 kb on - strand, within GFF1508at 102.117 kb on - strand, within GFF1508at 102.185 kb on + strand, within GFF1508at 102.186 kb on - strand, within GFF1508at 102.321 kb on - strandat 102.321 kb on - strandat 102.379 kb on + strandat 102.380 kb on - strandat 102.380 kb on - strandat 102.380 kb on - strandat 102.436 kb on + strand, within GFF1509at 102.437 kb on - strand, within GFF1509at 102.437 kb on - strand, within GFF1509at 102.437 kb on - strand, within GFF1509

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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98,579 + GFF1506 0.51 +1.4
98,579 + GFF1506 0.51 +1.4
98,579 + GFF1506 0.51 +1.5
98,580 - GFF1506 0.51 +1.7
98,580 - GFF1506 0.51 +1.2
98,580 - GFF1506 0.51 -1.2
98,702 + GFF1506 0.59 -2.0
98,735 + GFF1506 0.61 -0.2
98,736 - GFF1506 0.61 -0.6
98,780 + GFF1506 0.64 -0.1
98,780 + GFF1506 0.64 -1.4
98,781 - GFF1506 0.64 -1.7
98,795 + GFF1506 0.65 -0.3
98,795 + GFF1506 0.65 -0.0
98,796 - GFF1506 0.65 -0.8
98,831 + GFF1506 0.67 -0.9
98,831 + GFF1506 0.67 +0.8
98,832 - GFF1506 0.67 -0.4
98,832 - GFF1506 0.67 -0.9
98,832 - GFF1506 0.67 +0.4
98,876 + GFF1506 0.70 -1.0
98,876 + GFF1506 0.70 -2.3
98,877 - GFF1506 0.70 -3.0
98,987 + GFF1506 0.77 -2.9
98,988 - GFF1506 0.77 +0.1
98,988 - GFF1506 0.77 -1.5
99,391 - -1.1
99,391 - -0.3
99,391 - -1.4
99,597 + GFF1507 0.11 -0.5
99,598 - GFF1507 0.11 -0.6
99,660 + GFF1507 0.14 -1.4
99,660 + GFF1507 0.14 -1.1
99,660 + GFF1507 0.14 -1.1
99,661 - GFF1507 0.14 +0.4
99,661 - GFF1507 0.14 +0.2
99,723 + GFF1507 0.17 -1.1
99,723 + GFF1507 0.17 -1.1
99,723 + GFF1507 0.17 -0.6
99,724 - GFF1507 0.17 +0.3
99,948 + GFF1507 0.28 -1.9
99,948 + GFF1507 0.28 +2.2
99,948 + GFF1507 0.28 +2.3
99,949 - GFF1507 0.28 -0.4
99,949 - GFF1507 0.28 -0.5
100,042 - GFF1507 0.32 -1.1
100,042 - GFF1507 0.32 +0.1
100,668 + GFF1507 0.62 +1.6
100,669 - GFF1507 0.63 +1.1
100,731 + GFF1507 0.66 +1.0
100,731 + GFF1507 0.66 +0.7
100,731 + GFF1507 0.66 +1.0
100,731 + GFF1507 0.66 -2.7
100,731 + GFF1507 0.66 -0.5
100,731 + GFF1507 0.66 +0.5
100,731 + GFF1507 0.66 +0.3
100,732 - GFF1507 0.66 +1.2
100,732 - GFF1507 0.66 -0.3
101,546 + GFF1508 0.12 -2.4
101,547 - GFF1508 0.12 -2.3
101,570 + GFF1508 0.14 -1.1
101,771 + GFF1508 0.37 -1.0
101,771 + GFF1508 0.37 -1.4
101,771 + GFF1508 0.37 -1.1
101,771 + GFF1508 0.37 +0.1
101,820 - GFF1508 0.42 -0.1
101,820 - GFF1508 0.42 +0.5
101,822 + GFF1508 0.42 -0.8
101,822 + GFF1508 0.42 +0.8
101,822 + GFF1508 0.42 +0.5
101,823 - GFF1508 0.43 -2.0
101,879 + GFF1508 0.49 -0.7
101,879 + GFF1508 0.49 -1.3
101,879 + GFF1508 0.49 +0.5
101,879 + GFF1508 0.49 +0.8
101,880 - GFF1508 0.49 -1.1
101,880 - GFF1508 0.49 -0.4
101,880 - GFF1508 0.49 +0.9
102,074 + GFF1508 0.70 -1.1
102,110 + GFF1508 0.74 +0.3
102,111 - GFF1508 0.75 -0.3
102,111 - GFF1508 0.75 -2.1
102,116 + GFF1508 0.75 -0.3
102,116 + GFF1508 0.75 -1.6
102,116 + GFF1508 0.75 +0.1
102,117 - GFF1508 0.75 +0.4
102,117 - GFF1508 0.75 -2.4
102,185 + GFF1508 0.83 +0.6
102,186 - GFF1508 0.83 -0.2
102,321 - -0.3
102,321 - -0.4
102,379 + +2.7
102,380 - +0.1
102,380 - +0.6
102,380 - -0.4
102,436 + GFF1509 0.10 +0.4
102,437 - GFF1509 0.10 +1.7
102,437 - GFF1509 0.10 +0.7
102,437 - GFF1509 0.10 -1.6

Or see this region's nucleotide sequence