Strain Fitness in Variovorax sp. SCN45 around GFF147

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF146 and GFF147 are separated by 18 nucleotidesGFF147 and GFF148 are separated by 114 nucleotides GFF146 - hypothetical protein, at 175,282 to 176,145 GFF146 GFF147 - Transcriptional regulator, at 176,164 to 176,475 GFF147 GFF148 - Transcriptional regulator, LysR family, at 176,590 to 177,483 GFF148 Position (kb) 176 177Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.317 kb on - strandat 175.317 kb on - strandat 175.317 kb on - strandat 175.397 kb on + strand, within GFF146at 175.529 kb on + strand, within GFF146at 175.530 kb on - strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.820 kb on + strand, within GFF146at 175.821 kb on - strand, within GFF146at 175.821 kb on - strand, within GFF146at 175.821 kb on - strand, within GFF146at 175.821 kb on - strand, within GFF146at 176.139 kb on + strandat 176.139 kb on + strandat 176.140 kb on - strandat 176.140 kb on - strandat 176.140 kb on - strandat 176.140 kb on - strandat 176.406 kb on - strand, within GFF147at 176.406 kb on - strand, within GFF147at 176.406 kb on - strand, within GFF147at 176.449 kb on - strandat 176.450 kb on + strandat 176.450 kb on + strandat 176.451 kb on - strandat 176.537 kb on - strandat 176.559 kb on + strandat 176.560 kb on - strandat 176.560 kb on - strandat 176.560 kb on - strandat 176.560 kb on - strandat 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148at 177.257 kb on + strand, within GFF148at 177.258 kb on - strand, within GFF148at 177.258 kb on - strand, within GFF148

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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175,316 + -1.0
175,316 + -3.1
175,316 + -1.0
175,316 + -3.6
175,316 + -0.7
175,316 + -0.6
175,317 - -2.4
175,317 - +0.3
175,317 - -1.7
175,397 + GFF146 0.13 +1.0
175,529 + GFF146 0.29 -1.0
175,530 - GFF146 0.29 -1.0
175,649 + GFF146 0.42 -0.3
175,649 + GFF146 0.42 -1.5
175,649 + GFF146 0.42 -2.4
175,649 + GFF146 0.42 -0.3
175,649 + GFF146 0.42 +0.3
175,650 - GFF146 0.43 +0.7
175,650 - GFF146 0.43 +1.3
175,650 - GFF146 0.43 -0.9
175,650 - GFF146 0.43 +0.5
175,650 - GFF146 0.43 -0.0
175,650 - GFF146 0.43 -0.3
175,650 - GFF146 0.43 -1.5
175,712 + GFF146 0.50 +0.0
175,712 + GFF146 0.50 +0.7
175,712 + GFF146 0.50 +0.0
175,712 + GFF146 0.50 +0.7
175,712 + GFF146 0.50 -1.2
175,712 + GFF146 0.50 -3.0
175,712 + GFF146 0.50 -1.1
175,712 + GFF146 0.50 -1.9
175,712 + GFF146 0.50 -1.8
175,712 + GFF146 0.50 +0.9
175,712 + GFF146 0.50 +1.2
175,713 - GFF146 0.50 +1.3
175,713 - GFF146 0.50 +1.3
175,713 - GFF146 0.50 -2.2
175,713 - GFF146 0.50 -1.8
175,713 - GFF146 0.50 -0.3
175,713 - GFF146 0.50 -2.3
175,713 - GFF146 0.50 +0.4
175,713 - GFF146 0.50 -0.7
175,713 - GFF146 0.50 +1.6
175,713 - GFF146 0.50 +0.1
175,713 - GFF146 0.50 -1.4
175,713 - GFF146 0.50 -0.5
175,713 - GFF146 0.50 -2.5
175,713 - GFF146 0.50 +0.7
175,713 - GFF146 0.50 -0.2
175,713 - GFF146 0.50 -2.6
175,713 - GFF146 0.50 +0.1
175,713 - GFF146 0.50 -2.3
175,715 + GFF146 0.50 +0.0
175,715 + GFF146 0.50 +0.3
175,715 + GFF146 0.50 -0.3
175,715 + GFF146 0.50 -0.7
175,820 + GFF146 0.62 +0.3
175,821 - GFF146 0.62 -2.8
175,821 - GFF146 0.62 -0.7
175,821 - GFF146 0.62 -3.4
175,821 - GFF146 0.62 -3.4
176,139 + -2.6
176,139 + -0.4
176,140 - +0.6
176,140 - +0.1
176,140 - +1.8
176,140 - -1.9
176,406 - GFF147 0.78 -2.5
176,406 - GFF147 0.78 -1.4
176,406 - GFF147 0.78 +0.3
176,449 - +0.3
176,450 + -2.0
176,450 + -0.1
176,451 - -1.0
176,537 - -0.4
176,559 + -2.5
176,560 - +0.6
176,560 - +1.6
176,560 - -2.6
176,560 - -0.1
176,999 + GFF148 0.46 -0.7
176,999 + GFF148 0.46 -0.8
176,999 + GFF148 0.46 +0.8
176,999 + GFF148 0.46 -0.6
176,999 + GFF148 0.46 -0.7
177,257 + GFF148 0.75 -3.8
177,258 - GFF148 0.75 -1.0
177,258 - GFF148 0.75 -0.5

Or see this region's nucleotide sequence