Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1459 and GFF1460 are separated by 114 nucleotides GFF1460 and GFF1461 are separated by 2 nucleotides GFF1461 and GFF1462 overlap by 4 nucleotides
GFF1459 - Glutathione S-transferase (EC 2.5.1.18), at 51,081 to 51,731
GFF1459
GFF1460 - Enoyl-CoA hydratase/isomerase, at 51,846 to 52,592
GFF1460
GFF1461 - Enoyl-CoA hydratase (EC 4.2.1.17), at 52,595 to 53,401
GFF1461
GFF1462 - L-carnitine dehydratase/bile acid-inducible protein F, at 53,398 to 54,600
GFF1462
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 52.199 kb on - strand, within GFF1460 at 52.297 kb on + strand, within GFF1460 at 52.298 kb on - strand, within GFF1460 at 52.298 kb on - strand, within GFF1460 at 52.405 kb on + strand, within GFF1460 at 52.421 kb on - strand, within GFF1460 at 52.421 kb on - strand, within GFF1460 at 52.653 kb on + strand at 52.653 kb on + strand at 52.791 kb on + strand, within GFF1461 at 52.792 kb on - strand, within GFF1461 at 52.792 kb on - strand, within GFF1461 at 52.792 kb on - strand, within GFF1461 at 52.947 kb on + strand, within GFF1461 at 52.948 kb on - strand, within GFF1461 at 52.979 kb on + strand, within GFF1461 at 53.130 kb on + strand, within GFF1461 at 53.130 kb on + strand, within GFF1461 at 53.131 kb on - strand, within GFF1461 at 53.131 kb on - strand, within GFF1461 at 53.131 kb on - strand, within GFF1461 at 53.510 kb on + strand at 53.645 kb on + strand, within GFF1462 at 53.777 kb on + strand, within GFF1462 at 53.777 kb on + strand, within GFF1462 at 53.778 kb on - strand, within GFF1462 at 53.837 kb on + strand, within GFF1462 at 53.837 kb on + strand, within GFF1462 at 53.838 kb on - strand, within GFF1462 at 53.838 kb on - strand, within GFF1462 at 53.838 kb on - strand, within GFF1462 at 53.838 kb on - strand, within GFF1462 at 53.838 kb on - strand, within GFF1462 at 53.932 kb on + strand, within GFF1462 at 53.952 kb on - strand, within GFF1462 at 54.270 kb on - strand, within GFF1462
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 52,199 - GFF1460 0.47 +1.5 52,297 + GFF1460 0.60 +0.8 52,298 - GFF1460 0.61 -0.1 52,298 - GFF1460 0.61 -0.8 52,405 + GFF1460 0.75 -0.6 52,421 - GFF1460 0.77 -0.5 52,421 - GFF1460 0.77 -2.1 52,653 + +1.1 52,653 + +0.1 52,791 + GFF1461 0.24 +0.5 52,792 - GFF1461 0.24 +0.3 52,792 - GFF1461 0.24 -1.0 52,792 - GFF1461 0.24 -2.7 52,947 + GFF1461 0.44 -0.9 52,948 - GFF1461 0.44 +0.3 52,979 + GFF1461 0.48 +1.1 53,130 + GFF1461 0.66 +0.9 53,130 + GFF1461 0.66 +2.3 53,131 - GFF1461 0.66 +1.1 53,131 - GFF1461 0.66 -1.0 53,131 - GFF1461 0.66 -0.4 53,510 + -1.0 53,645 + GFF1462 0.21 -3.2 53,777 + GFF1462 0.32 +3.2 53,777 + GFF1462 0.32 +0.5 53,778 - GFF1462 0.32 +0.2 53,837 + GFF1462 0.36 +1.0 53,837 + GFF1462 0.36 -1.1 53,838 - GFF1462 0.37 +0.8 53,838 - GFF1462 0.37 +1.1 53,838 - GFF1462 0.37 -1.4 53,838 - GFF1462 0.37 -0.2 53,838 - GFF1462 0.37 -1.0 53,932 + GFF1462 0.44 +0.5 53,952 - GFF1462 0.46 -3.2 54,270 - GFF1462 0.72 -0.7
Or see this region's nucleotide sequence