Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1287 and GFF1288 are separated by 0 nucleotides GFF1288 and GFF1289 are separated by 1 nucleotides GFF1289 and GFF1290 are separated by 19 nucleotides
GFF1287 - Sulfate and thiosulfate binding protein CysP, at 614,293 to 615,309
GFF1287
GFF1288 - Sulfate transport system permease protein CysT, at 615,310 to 616,197
GFF1288
GFF1289 - Sulfate transport system permease protein CysW, at 616,199 to 617,101
GFF1289
GFF1290 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 617,121 to 618,218
GFF1290
Position (kb) 616
617
618 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 615.289 kb on + strand at 615.289 kb on + strand at 615.289 kb on + strand at 615.289 kb on + strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.291 kb on + strand at 615.291 kb on + strand at 615.307 kb on + strand at 615.307 kb on + strand at 615.433 kb on + strand, within GFF1288 at 615.545 kb on - strand, within GFF1288 at 615.628 kb on + strand, within GFF1288 at 615.628 kb on + strand, within GFF1288 at 615.629 kb on - strand, within GFF1288 at 615.629 kb on - strand, within GFF1288 at 616.000 kb on + strand, within GFF1288 at 616.084 kb on + strand, within GFF1288 at 616.084 kb on + strand, within GFF1288 at 616.085 kb on - strand, within GFF1288 at 616.090 kb on + strand, within GFF1288 at 616.090 kb on + strand, within GFF1288 at 616.091 kb on - strand, within GFF1288 at 616.365 kb on - strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.821 kb on - strand, within GFF1289 at 616.821 kb on - strand, within GFF1289 at 616.935 kb on - strand, within GFF1289 at 616.935 kb on - strand, within GFF1289 at 616.943 kb on + strand, within GFF1289 at 616.944 kb on - strand, within GFF1289 at 616.944 kb on - strand, within GFF1289 at 616.944 kb on - strand, within GFF1289 at 617.367 kb on + strand, within GFF1290 at 617.368 kb on - strand, within GFF1290 at 617.821 kb on - strand, within GFF1290 at 617.943 kb on + strand, within GFF1290 at 617.943 kb on + strand, within GFF1290 at 617.976 kb on + strand, within GFF1290 at 617.976 kb on + strand, within GFF1290 at 617.976 kb on + strand, within GFF1290 at 617.977 kb on - strand, within GFF1290 at 617.977 kb on - strand, within GFF1290 at 617.977 kb on - strand, within GFF1290
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 615,289 + -0.0 615,289 + -3.5 615,289 + -1.4 615,289 + -3.7 615,290 - -2.4 615,290 - +0.5 615,290 - -0.1 615,290 - -0.4 615,290 - -0.7 615,291 + +1.2 615,291 + +0.5 615,307 + +0.5 615,307 + -1.0 615,433 + GFF1288 0.14 -2.6 615,545 - GFF1288 0.26 -0.1 615,628 + GFF1288 0.36 -0.4 615,628 + GFF1288 0.36 +1.0 615,629 - GFF1288 0.36 -1.8 615,629 - GFF1288 0.36 -1.4 616,000 + GFF1288 0.78 -1.8 616,084 + GFF1288 0.87 +0.4 616,084 + GFF1288 0.87 +0.3 616,085 - GFF1288 0.87 -0.2 616,090 + GFF1288 0.88 +0.1 616,090 + GFF1288 0.88 -2.0 616,091 - GFF1288 0.88 +1.4 616,365 - GFF1289 0.18 -1.8 616,568 + GFF1289 0.41 -1.4 616,568 + GFF1289 0.41 -1.6 616,568 + GFF1289 0.41 -0.7 616,568 + GFF1289 0.41 -1.8 616,568 + GFF1289 0.41 -0.3 616,568 + GFF1289 0.41 -1.1 616,568 + GFF1289 0.41 -2.9 616,568 + GFF1289 0.41 -1.9 616,569 - GFF1289 0.41 -0.5 616,569 - GFF1289 0.41 -0.2 616,569 - GFF1289 0.41 -1.6 616,569 - GFF1289 0.41 -1.5 616,569 - GFF1289 0.41 -2.0 616,569 - GFF1289 0.41 +0.1 616,569 - GFF1289 0.41 -1.1 616,569 - GFF1289 0.41 +0.2 616,569 - GFF1289 0.41 -2.7 616,569 - GFF1289 0.41 -2.0 616,569 - GFF1289 0.41 -1.2 616,569 - GFF1289 0.41 +0.1 616,569 - GFF1289 0.41 -2.4 616,569 - GFF1289 0.41 -2.3 616,569 - GFF1289 0.41 -2.7 616,569 - GFF1289 0.41 -0.1 616,821 - GFF1289 0.69 -1.0 616,821 - GFF1289 0.69 -2.8 616,935 - GFF1289 0.82 -0.5 616,935 - GFF1289 0.82 +0.0 616,943 + GFF1289 0.82 +0.1 616,944 - GFF1289 0.83 -0.8 616,944 - GFF1289 0.83 -2.9 616,944 - GFF1289 0.83 +0.4 617,367 + GFF1290 0.22 +0.7 617,368 - GFF1290 0.22 -0.3 617,821 - GFF1290 0.64 -0.6 617,943 + GFF1290 0.75 -0.4 617,943 + GFF1290 0.75 +0.0 617,976 + GFF1290 0.78 +0.7 617,976 + GFF1290 0.78 -3.2 617,976 + GFF1290 0.78 -0.6 617,977 - GFF1290 0.78 -1.8 617,977 - GFF1290 0.78 -0.9 617,977 - GFF1290 0.78 -0.0
Or see this region's nucleotide sequence