Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1257 and GFF1259 are separated by 85 nucleotides GFF1259 and GFF1258 overlap by 2 nucleotides GFF1258 and GFF1260 overlap by 4 nucleotides GFF1260 and GFF1261 are separated by 647 nucleotides
GFF1257 - Organosulfonate utilization protein SsuF, at 575,442 to 575,657
GFF1257
GFF1259 - no description, at 575,743 to 575,880
GFF1259
GFF1258 - FIG00348129: hypothetical protein, at 575,879 to 576,604
GFF1258
GFF1260 - no description, at 576,601 to 577,167
GFF1260
GFF1261 - no description, at 577,815 to 578,378
GFF1261
Position (kb) 576
577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 575.745 kb on - strand at 575.838 kb on + strand, within GFF1259 at 575.838 kb on + strand, within GFF1259 at 575.839 kb on - strand, within GFF1259 at 576.095 kb on + strand, within GFF1258 at 576.095 kb on + strand, within GFF1258 at 576.096 kb on - strand, within GFF1258 at 576.096 kb on - strand, within GFF1258 at 576.152 kb on + strand, within GFF1258 at 576.152 kb on + strand, within GFF1258 at 576.153 kb on - strand, within GFF1258 at 576.153 kb on - strand, within GFF1258 at 576.153 kb on - strand, within GFF1258 at 576.171 kb on - strand, within GFF1258 at 576.171 kb on - strand, within GFF1258 at 576.413 kb on - strand, within GFF1258 at 576.414 kb on + strand, within GFF1258 at 576.414 kb on + strand, within GFF1258 at 576.415 kb on - strand, within GFF1258 at 576.415 kb on - strand, within GFF1258 at 576.432 kb on + strand, within GFF1258 at 576.487 kb on - strand, within GFF1258 at 576.492 kb on + strand, within GFF1258 at 576.635 kb on + strand at 576.635 kb on + strand at 576.636 kb on - strand at 576.698 kb on - strand, within GFF1260 at 576.698 kb on - strand, within GFF1260 at 576.698 kb on - strand, within GFF1260 at 576.738 kb on + strand, within GFF1260 at 576.783 kb on - strand, within GFF1260 at 576.820 kb on - strand, within GFF1260 at 576.860 kb on + strand, within GFF1260 at 576.961 kb on + strand, within GFF1260 at 576.962 kb on - strand, within GFF1260 at 577.004 kb on - strand, within GFF1260 at 577.013 kb on - strand, within GFF1260 at 577.189 kb on + strand at 577.190 kb on - strand at 577.190 kb on - strand at 577.190 kb on - strand at 577.190 kb on - strand at 577.263 kb on + strand at 577.267 kb on - strand at 577.297 kb on + strand at 577.297 kb on + strand at 577.298 kb on - strand at 577.300 kb on + strand at 577.300 kb on + strand at 577.300 kb on + strand at 577.300 kb on + strand at 577.300 kb on + strand at 577.301 kb on - strand at 577.301 kb on - strand at 577.301 kb on - strand at 577.304 kb on + strand at 577.304 kb on + strand at 577.409 kb on + strand at 577.409 kb on + strand at 577.409 kb on + strand at 577.449 kb on - strand at 577.565 kb on + strand at 577.566 kb on - strand at 577.566 kb on - strand at 577.607 kb on + strand at 577.608 kb on - strand at 577.608 kb on - strand at 577.692 kb on + strand at 577.763 kb on - strand at 577.793 kb on + strand at 577.793 kb on + strand at 577.794 kb on - strand at 577.794 kb on - strand at 577.900 kb on - strand, within GFF1261 at 577.912 kb on - strand, within GFF1261 at 577.912 kb on - strand, within GFF1261 at 577.912 kb on - strand, within GFF1261 at 578.028 kb on + strand, within GFF1261 at 578.028 kb on + strand, within GFF1261 at 578.055 kb on + strand, within GFF1261 at 578.056 kb on - strand, within GFF1261 at 578.056 kb on - strand, within GFF1261 at 578.106 kb on - strand, within GFF1261 at 578.106 kb on - strand, within GFF1261
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 575,745 - -2.3 575,838 + GFF1259 0.69 +0.6 575,838 + GFF1259 0.69 +0.9 575,839 - GFF1259 0.70 +0.6 576,095 + GFF1258 0.30 -2.6 576,095 + GFF1258 0.30 -1.8 576,096 - GFF1258 0.30 +0.6 576,096 - GFF1258 0.30 -3.2 576,152 + GFF1258 0.38 +0.1 576,152 + GFF1258 0.38 +0.2 576,153 - GFF1258 0.38 -1.6 576,153 - GFF1258 0.38 +0.7 576,153 - GFF1258 0.38 +0.9 576,171 - GFF1258 0.40 -1.0 576,171 - GFF1258 0.40 +0.4 576,413 - GFF1258 0.74 -0.8 576,414 + GFF1258 0.74 +1.3 576,414 + GFF1258 0.74 -3.4 576,415 - GFF1258 0.74 -2.1 576,415 - GFF1258 0.74 +0.4 576,432 + GFF1258 0.76 -2.6 576,487 - GFF1258 0.84 -2.1 576,492 + GFF1258 0.84 -2.0 576,635 + -2.7 576,635 + -1.4 576,636 - +1.4 576,698 - GFF1260 0.17 +1.1 576,698 - GFF1260 0.17 +0.2 576,698 - GFF1260 0.17 -2.0 576,738 + GFF1260 0.24 +1.6 576,783 - GFF1260 0.32 -2.0 576,820 - GFF1260 0.39 +1.7 576,860 + GFF1260 0.46 +2.4 576,961 + GFF1260 0.63 -1.0 576,962 - GFF1260 0.64 -0.5 577,004 - GFF1260 0.71 -2.7 577,013 - GFF1260 0.73 -0.5 577,189 + +1.6 577,190 - -1.8 577,190 - +1.4 577,190 - -0.1 577,190 - -2.3 577,263 + +1.0 577,267 - -0.6 577,297 + -0.3 577,297 + +0.5 577,298 - -2.6 577,300 + -1.1 577,300 + -0.6 577,300 + +0.3 577,300 + -0.5 577,300 + +0.0 577,301 - -1.9 577,301 - +0.5 577,301 - -0.6 577,304 + -2.3 577,304 + -1.1 577,409 + +0.8 577,409 + +0.7 577,409 + -1.6 577,449 - +0.4 577,565 + +0.2 577,566 - -0.6 577,566 - -2.2 577,607 + -3.2 577,608 - +0.4 577,608 - -1.4 577,692 + +0.4 577,763 - -1.0 577,793 + -1.0 577,793 + -2.6 577,794 - -2.2 577,794 - +0.3 577,900 - GFF1261 0.15 -0.0 577,912 - GFF1261 0.17 +1.1 577,912 - GFF1261 0.17 +0.9 577,912 - GFF1261 0.17 -0.3 578,028 + GFF1261 0.38 +0.4 578,028 + GFF1261 0.38 -2.6 578,055 + GFF1261 0.43 -0.3 578,056 - GFF1261 0.43 -1.0 578,056 - GFF1261 0.43 -1.1 578,106 - GFF1261 0.52 -1.4 578,106 - GFF1261 0.52 -1.1
Or see this region's nucleotide sequence