Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1239 and GFF1240 are separated by 78 nucleotides GFF1240 and GFF1241 are separated by 139 nucleotides
GFF1239 - Two-component system sensor histidine kinase, at 557,326 to 558,822
GFF1239
GFF1240 - Enoyl-CoA hydratase (EC 4.2.1.17), at 558,901 to 559,824
GFF1240
GFF1241 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) periplasmic (secreted in GramPositives), at 559,964 to 561,175
GFF1241
Position (kb) 558
559
560 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 558.190 kb on + strand, within GFF1239 at 558.247 kb on + strand, within GFF1239 at 558.326 kb on - strand, within GFF1239 at 558.855 kb on + strand at 558.855 kb on + strand at 558.855 kb on + strand at 558.855 kb on + strand at 558.855 kb on + strand at 558.855 kb on + strand at 558.855 kb on + strand at 558.855 kb on + strand at 558.856 kb on - strand at 558.856 kb on - strand at 558.856 kb on - strand at 558.856 kb on - strand at 558.856 kb on - strand at 558.856 kb on - strand at 558.856 kb on - strand at 558.856 kb on - strand at 558.856 kb on - strand at 559.020 kb on - strand, within GFF1240 at 559.020 kb on - strand, within GFF1240 at 559.120 kb on + strand, within GFF1240 at 559.120 kb on + strand, within GFF1240 at 559.121 kb on - strand, within GFF1240 at 559.121 kb on - strand, within GFF1240 at 559.201 kb on + strand, within GFF1240 at 559.201 kb on + strand, within GFF1240 at 559.201 kb on + strand, within GFF1240 at 559.201 kb on + strand, within GFF1240 at 559.201 kb on + strand, within GFF1240 at 559.201 kb on + strand, within GFF1240 at 559.201 kb on + strand, within GFF1240 at 559.201 kb on + strand, within GFF1240 at 559.202 kb on - strand, within GFF1240 at 559.202 kb on - strand, within GFF1240 at 559.357 kb on + strand, within GFF1240 at 559.357 kb on + strand, within GFF1240 at 559.357 kb on + strand, within GFF1240 at 559.358 kb on - strand, within GFF1240 at 559.358 kb on - strand, within GFF1240 at 559.358 kb on - strand, within GFF1240 at 559.406 kb on - strand, within GFF1240 at 559.926 kb on + strand at 559.927 kb on - strand at 559.940 kb on + strand at 559.941 kb on - strand at 559.961 kb on + strand at 559.961 kb on + strand at 559.961 kb on + strand at 560.195 kb on + strand, within GFF1241 at 560.196 kb on - strand, within GFF1241 at 560.196 kb on - strand, within GFF1241 at 560.196 kb on - strand, within GFF1241 at 560.196 kb on - strand, within GFF1241 at 560.392 kb on + strand, within GFF1241 at 560.392 kb on + strand, within GFF1241 at 560.393 kb on - strand, within GFF1241 at 560.492 kb on + strand, within GFF1241 at 560.493 kb on - strand, within GFF1241 at 560.583 kb on - strand, within GFF1241 at 560.583 kb on - strand, within GFF1241 at 560.583 kb on - strand, within GFF1241 at 560.583 kb on - strand, within GFF1241 at 560.606 kb on + strand, within GFF1241 at 560.606 kb on + strand, within GFF1241 at 560.607 kb on - strand, within GFF1241 at 560.607 kb on - strand, within GFF1241 at 560.607 kb on - strand, within GFF1241 at 560.768 kb on + strand, within GFF1241 at 560.819 kb on + strand, within GFF1241 at 560.819 kb on + strand, within GFF1241 at 560.819 kb on + strand, within GFF1241 at 560.820 kb on - strand, within GFF1241 at 560.820 kb on - strand, within GFF1241 at 560.820 kb on - strand, within GFF1241 at 560.820 kb on - strand, within GFF1241
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 558,190 + GFF1239 0.58 -0.2 558,247 + GFF1239 0.62 -0.3 558,326 - GFF1239 0.67 -2.3 558,855 + +0.7 558,855 + -1.6 558,855 + -2.1 558,855 + -1.2 558,855 + -1.5 558,855 + -2.0 558,855 + +0.2 558,855 + +0.1 558,856 - -0.4 558,856 - -0.0 558,856 - -2.2 558,856 - +0.4 558,856 - -1.3 558,856 - +0.3 558,856 - -0.0 558,856 - +1.4 558,856 - -0.4 559,020 - GFF1240 0.13 -3.1 559,020 - GFF1240 0.13 -2.3 559,120 + GFF1240 0.24 -0.4 559,120 + GFF1240 0.24 -1.0 559,121 - GFF1240 0.24 -2.1 559,121 - GFF1240 0.24 +1.4 559,201 + GFF1240 0.32 +2.0 559,201 + GFF1240 0.32 +0.3 559,201 + GFF1240 0.32 -1.2 559,201 + GFF1240 0.32 -0.2 559,201 + GFF1240 0.32 -0.0 559,201 + GFF1240 0.32 -3.6 559,201 + GFF1240 0.32 -0.6 559,201 + GFF1240 0.32 -2.0 559,202 - GFF1240 0.33 -2.0 559,202 - GFF1240 0.33 +0.6 559,357 + GFF1240 0.49 -2.1 559,357 + GFF1240 0.49 -4.2 559,357 + GFF1240 0.49 -1.8 559,358 - GFF1240 0.49 -1.2 559,358 - GFF1240 0.49 -1.4 559,358 - GFF1240 0.49 +0.7 559,406 - GFF1240 0.55 -0.2 559,926 + +1.7 559,927 - +0.3 559,940 + +0.7 559,941 - -3.0 559,961 + -0.6 559,961 + -0.7 559,961 + +2.9 560,195 + GFF1241 0.19 -1.6 560,196 - GFF1241 0.19 +0.4 560,196 - GFF1241 0.19 +0.8 560,196 - GFF1241 0.19 -0.6 560,196 - GFF1241 0.19 -2.1 560,392 + GFF1241 0.35 +0.1 560,392 + GFF1241 0.35 +0.0 560,393 - GFF1241 0.35 +3.0 560,492 + GFF1241 0.44 -0.0 560,493 - GFF1241 0.44 -0.2 560,583 - GFF1241 0.51 -0.6 560,583 - GFF1241 0.51 -1.2 560,583 - GFF1241 0.51 -1.4 560,583 - GFF1241 0.51 +0.0 560,606 + GFF1241 0.53 -0.4 560,606 + GFF1241 0.53 +0.7 560,607 - GFF1241 0.53 -1.4 560,607 - GFF1241 0.53 +0.5 560,607 - GFF1241 0.53 +0.2 560,768 + GFF1241 0.66 -1.0 560,819 + GFF1241 0.71 -2.5 560,819 + GFF1241 0.71 -1.2 560,819 + GFF1241 0.71 -0.2 560,820 - GFF1241 0.71 -1.1 560,820 - GFF1241 0.71 +0.4 560,820 - GFF1241 0.71 -0.3 560,820 - GFF1241 0.71 -2.0
Or see this region's nucleotide sequence