Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1197 and GFF1198 overlap by 14 nucleotides GFF1198 and GFF1199 are separated by 85 nucleotides
GFF1197 - Transcriptional regulator, LysR family, at 515,664 to 516,599
GFF1197
GFF1198 - no description, at 516,586 to 517,332
GFF1198
GFF1199 - Uncharacterized protein similar to glutamate-1-semialdehyde aminotransferase, at 517,418 to 518,728
GFF1199
Position (kb) 516
517
518 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 515.599 kb on + strand at 515.599 kb on + strand at 515.599 kb on + strand at 515.599 kb on + strand at 515.599 kb on + strand at 515.599 kb on + strand at 515.599 kb on + strand at 515.599 kb on + strand at 515.599 kb on + strand at 515.599 kb on + strand at 515.600 kb on - strand at 515.600 kb on - strand at 515.600 kb on - strand at 515.600 kb on - strand at 515.600 kb on - strand at 515.600 kb on - strand at 515.600 kb on - strand at 515.600 kb on - strand at 515.600 kb on - strand at 515.600 kb on - strand at 515.600 kb on - strand at 515.600 kb on - strand at 515.656 kb on + strand at 515.656 kb on + strand at 515.657 kb on - strand at 515.657 kb on - strand at 515.663 kb on + strand at 515.663 kb on + strand at 515.663 kb on + strand at 515.663 kb on + strand at 515.663 kb on + strand at 515.663 kb on + strand at 515.664 kb on - strand at 515.664 kb on - strand at 515.664 kb on - strand at 515.664 kb on - strand at 515.664 kb on - strand at 515.664 kb on - strand at 515.988 kb on + strand, within GFF1197 at 516.058 kb on - strand, within GFF1197 at 516.058 kb on - strand, within GFF1197 at 516.058 kb on - strand, within GFF1197 at 516.058 kb on - strand, within GFF1197 at 516.058 kb on - strand, within GFF1197 at 516.171 kb on + strand, within GFF1197 at 516.171 kb on + strand, within GFF1197 at 516.171 kb on + strand, within GFF1197 at 516.171 kb on + strand, within GFF1197 at 516.183 kb on + strand, within GFF1197 at 516.183 kb on + strand, within GFF1197 at 516.183 kb on + strand, within GFF1197 at 516.183 kb on + strand, within GFF1197 at 516.183 kb on + strand, within GFF1197 at 516.183 kb on + strand, within GFF1197 at 516.183 kb on + strand, within GFF1197 at 516.184 kb on - strand, within GFF1197 at 516.184 kb on - strand, within GFF1197 at 516.184 kb on - strand, within GFF1197 at 516.184 kb on - strand, within GFF1197 at 516.588 kb on - strand at 516.640 kb on + strand at 516.640 kb on + strand at 516.640 kb on + strand at 516.640 kb on + strand at 516.640 kb on + strand at 516.640 kb on + strand at 516.641 kb on - strand at 516.641 kb on - strand at 516.641 kb on - strand at 516.641 kb on - strand at 516.641 kb on - strand at 516.641 kb on - strand at 516.641 kb on - strand at 516.641 kb on - strand at 516.641 kb on - strand at 516.641 kb on - strand at 516.872 kb on + strand, within GFF1198 at 516.872 kb on + strand, within GFF1198 at 516.872 kb on + strand, within GFF1198 at 516.872 kb on + strand, within GFF1198 at 516.872 kb on + strand, within GFF1198 at 516.872 kb on + strand, within GFF1198 at 516.872 kb on + strand, within GFF1198 at 516.873 kb on - strand, within GFF1198 at 516.873 kb on - strand, within GFF1198 at 516.873 kb on - strand, within GFF1198 at 516.873 kb on - strand, within GFF1198 at 516.873 kb on - strand, within GFF1198 at 517.387 kb on - strand at 517.457 kb on + strand at 517.457 kb on + strand at 517.457 kb on + strand at 517.458 kb on - strand at 517.517 kb on + strand at 517.517 kb on + strand at 517.517 kb on + strand at 517.517 kb on + strand at 517.517 kb on + strand at 517.518 kb on - strand at 517.518 kb on - strand at 517.518 kb on - strand at 517.518 kb on - strand at 517.519 kb on + strand at 517.519 kb on + strand at 517.519 kb on + strand at 517.520 kb on - strand at 517.520 kb on - strand at 517.520 kb on - strand at 517.520 kb on - strand at 517.520 kb on - strand at 517.520 kb on - strand at 517.520 kb on - strand at 517.520 kb on - strand at 517.520 kb on - strand at 517.553 kb on + strand, within GFF1199 at 517.553 kb on + strand, within GFF1199 at 517.554 kb on - strand, within GFF1199 at 517.554 kb on - strand, within GFF1199 at 517.622 kb on + strand, within GFF1199 at 517.622 kb on + strand, within GFF1199 at 517.622 kb on + strand, within GFF1199 at 517.623 kb on - strand, within GFF1199 at 517.625 kb on - strand, within GFF1199 at 517.643 kb on + strand, within GFF1199 at 517.643 kb on + strand, within GFF1199 at 517.643 kb on + strand, within GFF1199 at 517.658 kb on + strand, within GFF1199 at 517.659 kb on - strand, within GFF1199 at 517.659 kb on - strand, within GFF1199 at 517.659 kb on - strand, within GFF1199 at 517.893 kb on - strand, within GFF1199 at 517.893 kb on - strand, within GFF1199 at 517.967 kb on + strand, within GFF1199 at 517.967 kb on + strand, within GFF1199 at 517.968 kb on - strand, within GFF1199 at 517.968 kb on - strand, within GFF1199 at 518.028 kb on + strand, within GFF1199 at 518.028 kb on + strand, within GFF1199 at 518.029 kb on - strand, within GFF1199 at 518.029 kb on - strand, within GFF1199 at 518.219 kb on + strand, within GFF1199 at 518.219 kb on + strand, within GFF1199 at 518.219 kb on + strand, within GFF1199 at 518.220 kb on - strand, within GFF1199 at 518.220 kb on - strand, within GFF1199 at 518.220 kb on - strand, within GFF1199 at 518.220 kb on - strand, within GFF1199 at 518.220 kb on - strand, within GFF1199 at 518.220 kb on - strand, within GFF1199 at 518.220 kb on - strand, within GFF1199 at 518.220 kb on - strand, within GFF1199 at 518.220 kb on - strand, within GFF1199 at 518.220 kb on - strand, within GFF1199 at 518.220 kb on - strand, within GFF1199
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 515,599 + +3.1 515,599 + -0.3 515,599 + +1.4 515,599 + -0.4 515,599 + -0.2 515,599 + -0.3 515,599 + -1.3 515,599 + +0.5 515,599 + +0.6 515,599 + -1.4 515,600 - +1.6 515,600 - -2.6 515,600 - -1.4 515,600 - +0.1 515,600 - -0.2 515,600 - -0.8 515,600 - +1.9 515,600 - +0.4 515,600 - -2.3 515,600 - +0.0 515,600 - -0.5 515,600 - +1.0 515,656 + +0.4 515,656 + -2.0 515,657 - -2.7 515,657 - +0.5 515,663 + -2.4 515,663 + -0.9 515,663 + -1.1 515,663 + -2.6 515,663 + +0.0 515,663 + -0.5 515,664 - +0.4 515,664 - +0.5 515,664 - +0.9 515,664 - +0.9 515,664 - -0.3 515,664 - -2.2 515,988 + GFF1197 0.35 +0.7 516,058 - GFF1197 0.42 +0.9 516,058 - GFF1197 0.42 +1.1 516,058 - GFF1197 0.42 -0.2 516,058 - GFF1197 0.42 -2.2 516,058 - GFF1197 0.42 +0.1 516,171 + GFF1197 0.54 -0.5 516,171 + GFF1197 0.54 +0.8 516,171 + GFF1197 0.54 -3.2 516,171 + GFF1197 0.54 +1.1 516,183 + GFF1197 0.55 -0.5 516,183 + GFF1197 0.55 -3.5 516,183 + GFF1197 0.55 -0.7 516,183 + GFF1197 0.55 +0.1 516,183 + GFF1197 0.55 -0.7 516,183 + GFF1197 0.55 -0.7 516,183 + GFF1197 0.55 -1.4 516,184 - GFF1197 0.56 -1.6 516,184 - GFF1197 0.56 -1.2 516,184 - GFF1197 0.56 -0.3 516,184 - GFF1197 0.56 +0.0 516,588 - -1.6 516,640 + +0.4 516,640 + -2.3 516,640 + -1.4 516,640 + -0.8 516,640 + -1.2 516,640 + +0.6 516,641 - +0.0 516,641 - -3.2 516,641 - +0.4 516,641 - +0.4 516,641 - -0.3 516,641 - -1.2 516,641 - -3.4 516,641 - +2.8 516,641 - +0.4 516,641 - -1.8 516,872 + GFF1198 0.38 -0.2 516,872 + GFF1198 0.38 -1.5 516,872 + GFF1198 0.38 -1.4 516,872 + GFF1198 0.38 -1.8 516,872 + GFF1198 0.38 -3.8 516,872 + GFF1198 0.38 -0.2 516,872 + GFF1198 0.38 +0.4 516,873 - GFF1198 0.38 -1.0 516,873 - GFF1198 0.38 -2.0 516,873 - GFF1198 0.38 -0.8 516,873 - GFF1198 0.38 -0.1 516,873 - GFF1198 0.38 -1.3 517,387 - -0.3 517,457 + +0.7 517,457 + +0.4 517,457 + +1.4 517,458 - +0.6 517,517 + -0.4 517,517 + -0.6 517,517 + +0.6 517,517 + -0.7 517,517 + -2.3 517,518 - +1.2 517,518 - -2.1 517,518 - +2.0 517,518 - -0.3 517,519 + -4.8 517,519 + +1.4 517,519 + -0.6 517,520 - -1.6 517,520 - +0.7 517,520 - -0.8 517,520 - -1.0 517,520 - -3.6 517,520 - +0.1 517,520 - -1.8 517,520 - -1.2 517,520 - -0.1 517,553 + GFF1199 0.10 -1.8 517,553 + GFF1199 0.10 +0.2 517,554 - GFF1199 0.10 +0.6 517,554 - GFF1199 0.10 -0.5 517,622 + GFF1199 0.16 -0.2 517,622 + GFF1199 0.16 -0.2 517,622 + GFF1199 0.16 -1.2 517,623 - GFF1199 0.16 -1.0 517,625 - GFF1199 0.16 +0.5 517,643 + GFF1199 0.17 +0.9 517,643 + GFF1199 0.17 -0.0 517,643 + GFF1199 0.17 +1.1 517,658 + GFF1199 0.18 +0.7 517,659 - GFF1199 0.18 -1.0 517,659 - GFF1199 0.18 -1.8 517,659 - GFF1199 0.18 +1.0 517,893 - GFF1199 0.36 -0.2 517,893 - GFF1199 0.36 -1.4 517,967 + GFF1199 0.42 -2.0 517,967 + GFF1199 0.42 +0.7 517,968 - GFF1199 0.42 -0.3 517,968 - GFF1199 0.42 +0.8 518,028 + GFF1199 0.47 -0.4 518,028 + GFF1199 0.47 -0.3 518,029 - GFF1199 0.47 -2.0 518,029 - GFF1199 0.47 -2.3 518,219 + GFF1199 0.61 -0.8 518,219 + GFF1199 0.61 -1.4 518,219 + GFF1199 0.61 -0.8 518,220 - GFF1199 0.61 +0.1 518,220 - GFF1199 0.61 +0.4 518,220 - GFF1199 0.61 -1.4 518,220 - GFF1199 0.61 -0.2 518,220 - GFF1199 0.61 +0.5 518,220 - GFF1199 0.61 +0.4 518,220 - GFF1199 0.61 +1.9 518,220 - GFF1199 0.61 +1.6 518,220 - GFF1199 0.61 -1.2 518,220 - GFF1199 0.61 -0.6 518,220 - GFF1199 0.61 -1.8
Or see this region's nucleotide sequence