Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1129 and GFF1130 are separated by 48 nucleotides GFF1130 and GFF1131 are separated by 13 nucleotides GFF1131 and GFF1132 are separated by 3 nucleotides
GFF1129 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 445,119 to 446,693
GFF1129
GFF1130 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 446,742 to 447,476
GFF1130
GFF1131 - putative fatty acid desaturase, at 447,490 to 448,398
GFF1131
GFF1132 - 3-oxoacyl-[acyl-carrier-protein] synthase III (EC 2.3.1.41), at 448,402 to 450,327
GFF1132
Position (kb) 446
447
448 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 445.800 kb on + strand, within GFF1129 at 445.800 kb on + strand, within GFF1129 at 446.060 kb on + strand, within GFF1129 at 446.060 kb on + strand, within GFF1129 at 446.136 kb on + strand, within GFF1129 at 446.137 kb on - strand, within GFF1129 at 446.257 kb on - strand, within GFF1129 at 446.494 kb on - strand, within GFF1129 at 446.539 kb on - strand at 446.539 kb on - strand at 446.649 kb on + strand at 446.649 kb on + strand at 446.649 kb on + strand at 446.649 kb on + strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.691 kb on + strand at 446.691 kb on + strand at 446.691 kb on + strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.718 kb on - strand at 446.775 kb on + strand at 446.775 kb on + strand at 446.775 kb on + strand at 446.775 kb on + strand at 446.775 kb on + strand at 446.775 kb on + strand at 446.776 kb on - strand at 446.776 kb on - strand at 446.776 kb on - strand at 446.776 kb on - strand at 446.776 kb on - strand at 446.776 kb on - strand at 447.138 kb on + strand, within GFF1130 at 447.138 kb on + strand, within GFF1130 at 447.138 kb on + strand, within GFF1130 at 447.139 kb on - strand, within GFF1130 at 447.139 kb on - strand, within GFF1130 at 447.139 kb on - strand, within GFF1130 at 447.139 kb on - strand, within GFF1130 at 447.139 kb on - strand, within GFF1130 at 447.277 kb on - strand, within GFF1130 at 447.277 kb on - strand, within GFF1130 at 447.300 kb on + strand, within GFF1130 at 447.301 kb on - strand, within GFF1130 at 447.363 kb on + strand, within GFF1130 at 447.363 kb on + strand, within GFF1130 at 447.364 kb on - strand, within GFF1130 at 447.364 kb on - strand, within GFF1130 at 447.364 kb on - strand, within GFF1130 at 447.364 kb on - strand, within GFF1130 at 447.364 kb on - strand, within GFF1130 at 447.532 kb on + strand at 447.532 kb on + strand at 447.532 kb on + strand at 447.532 kb on + strand at 447.533 kb on - strand at 447.533 kb on - strand at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.802 kb on + strand, within GFF1131 at 447.802 kb on + strand, within GFF1131 at 447.803 kb on - strand, within GFF1131 at 447.838 kb on + strand, within GFF1131 at 447.838 kb on + strand, within GFF1131 at 447.838 kb on + strand, within GFF1131 at 447.838 kb on + strand, within GFF1131 at 447.838 kb on + strand, within GFF1131 at 447.934 kb on + strand, within GFF1131 at 447.934 kb on + strand, within GFF1131 at 447.935 kb on - strand, within GFF1131 at 447.949 kb on + strand, within GFF1131 at 447.949 kb on + strand, within GFF1131 at 447.950 kb on - strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.144 kb on + strand, within GFF1131 at 448.145 kb on - strand, within GFF1131 at 448.145 kb on - strand, within GFF1131 at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.426 kb on + strand at 448.426 kb on + strand at 448.427 kb on - strand at 448.427 kb on - strand at 448.444 kb on + strand at 448.444 kb on + strand at 448.445 kb on - strand at 448.445 kb on - strand at 448.445 kb on - strand at 448.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 445,800 + GFF1129 0.43 -3.2 445,800 + GFF1129 0.43 -0.1 446,060 + GFF1129 0.60 -0.1 446,060 + GFF1129 0.60 +0.6 446,136 + GFF1129 0.65 -2.3 446,137 - GFF1129 0.65 -0.3 446,257 - GFF1129 0.72 +0.3 446,494 - GFF1129 0.87 -0.1 446,539 - -2.9 446,539 - -0.1 446,649 + -0.9 446,649 + -1.8 446,649 + +0.7 446,649 + -1.4 446,650 - -0.9 446,650 - -0.1 446,650 - +0.4 446,650 - +1.4 446,650 - +1.2 446,650 - -2.4 446,650 - -0.8 446,691 + -0.9 446,691 + -0.2 446,691 + -2.1 446,692 - +0.3 446,692 - -2.5 446,692 - +0.4 446,692 - -3.4 446,692 - -2.3 446,692 - -1.5 446,692 - -1.4 446,718 - -2.6 446,775 + -0.6 446,775 + +0.7 446,775 + -0.6 446,775 + -0.8 446,775 + -3.6 446,775 + -0.2 446,776 - +2.6 446,776 - -0.3 446,776 - +1.1 446,776 - -2.9 446,776 - -0.4 446,776 - -1.9 447,138 + GFF1130 0.54 -1.4 447,138 + GFF1130 0.54 -1.4 447,138 + GFF1130 0.54 +0.2 447,139 - GFF1130 0.54 -2.6 447,139 - GFF1130 0.54 -2.0 447,139 - GFF1130 0.54 +1.1 447,139 - GFF1130 0.54 -1.1 447,139 - GFF1130 0.54 -1.4 447,277 - GFF1130 0.73 +2.4 447,277 - GFF1130 0.73 -0.3 447,300 + GFF1130 0.76 +1.6 447,301 - GFF1130 0.76 -1.1 447,363 + GFF1130 0.84 +0.5 447,363 + GFF1130 0.84 +1.0 447,364 - GFF1130 0.85 +0.6 447,364 - GFF1130 0.85 +0.9 447,364 - GFF1130 0.85 +2.3 447,364 - GFF1130 0.85 +0.4 447,364 - GFF1130 0.85 -1.1 447,532 + +0.9 447,532 + +1.2 447,532 + -1.9 447,532 + -0.0 447,533 - +0.2 447,533 - -1.1 447,595 + GFF1131 0.12 -1.7 447,595 + GFF1131 0.12 -0.1 447,595 + GFF1131 0.12 -2.1 447,595 + GFF1131 0.12 -1.6 447,595 + GFF1131 0.12 -1.5 447,596 - GFF1131 0.12 -1.7 447,596 - GFF1131 0.12 -0.8 447,596 - GFF1131 0.12 -0.6 447,596 - GFF1131 0.12 -0.1 447,596 - GFF1131 0.12 +0.4 447,596 - GFF1131 0.12 +0.8 447,802 + GFF1131 0.34 +0.2 447,802 + GFF1131 0.34 -0.1 447,803 - GFF1131 0.34 +0.3 447,838 + GFF1131 0.38 +0.6 447,838 + GFF1131 0.38 +0.9 447,838 + GFF1131 0.38 -1.1 447,838 + GFF1131 0.38 -1.7 447,838 + GFF1131 0.38 -1.1 447,934 + GFF1131 0.49 -2.8 447,934 + GFF1131 0.49 -3.1 447,935 - GFF1131 0.49 +3.2 447,949 + GFF1131 0.50 -2.6 447,949 + GFF1131 0.50 +1.6 447,950 - GFF1131 0.51 +0.6 448,063 + GFF1131 0.63 +1.6 448,063 + GFF1131 0.63 -0.9 448,063 + GFF1131 0.63 +2.4 448,063 + GFF1131 0.63 +1.0 448,063 + GFF1131 0.63 +1.2 448,063 + GFF1131 0.63 -0.9 448,063 + GFF1131 0.63 -2.5 448,064 - GFF1131 0.63 +0.3 448,064 - GFF1131 0.63 +0.7 448,064 - GFF1131 0.63 -2.0 448,064 - GFF1131 0.63 -0.7 448,064 - GFF1131 0.63 -3.0 448,064 - GFF1131 0.63 -0.3 448,064 - GFF1131 0.63 -1.0 448,064 - GFF1131 0.63 -0.1 448,064 - GFF1131 0.63 +0.0 448,064 - GFF1131 0.63 +0.6 448,144 + GFF1131 0.72 -2.7 448,145 - GFF1131 0.72 -1.7 448,145 - GFF1131 0.72 -2.9 448,312 + -1.2 448,312 + -0.9 448,312 + -0.9 448,312 + -1.1 448,312 + +1.6 448,312 + -1.5 448,312 + +0.7 448,312 + -2.3 448,312 + -2.4 448,312 + -0.1 448,312 + +1.3 448,312 + -0.1 448,312 + -0.3 448,313 - +1.4 448,313 - -1.5 448,313 - +1.7 448,313 - -1.1 448,313 - -0.6 448,313 - +1.1 448,313 - -3.8 448,313 - -0.9 448,313 - -1.6 448,313 - -0.9 448,426 + +2.1 448,426 + +0.5 448,427 - -3.9 448,427 - +0.3 448,444 + -0.1 448,444 + +0.7 448,445 - -1.4 448,445 - -0.8 448,445 - +1.5 448,445 - +1.3
Or see this region's nucleotide sequence