Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1127 and GFF1128 are separated by 56 nucleotides GFF1128 and GFF1129 are separated by 120 nucleotides GFF1129 and GFF1130 are separated by 48 nucleotides GFF1130 and GFF1131 are separated by 13 nucleotides
GFF1127 - Aldehyde dehydrogenase (EC 1.2.1.3), at 442,951 to 444,384
GFF1127
GFF1128 - Alkyl hydroperoxide reductase subunit C-like protein, at 444,441 to 444,998
GFF1128
GFF1129 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 445,119 to 446,693
GFF1129
GFF1130 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 446,742 to 447,476
GFF1130
GFF1131 - putative fatty acid desaturase, at 447,490 to 448,398
GFF1131
Position (kb) 445
446
447 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 444.371 kb on + strand at 444.371 kb on + strand at 444.371 kb on + strand at 444.371 kb on + strand at 444.371 kb on + strand at 444.371 kb on + strand at 444.371 kb on + strand at 444.371 kb on + strand at 444.371 kb on + strand at 444.371 kb on + strand at 444.371 kb on + strand at 444.371 kb on + strand at 444.371 kb on + strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.372 kb on - strand at 444.442 kb on + strand at 444.442 kb on + strand at 444.442 kb on + strand at 444.442 kb on + strand at 444.442 kb on + strand at 444.442 kb on + strand at 444.443 kb on - strand at 444.443 kb on - strand at 444.526 kb on + strand, within GFF1128 at 444.526 kb on + strand, within GFF1128 at 444.526 kb on + strand, within GFF1128 at 444.527 kb on - strand, within GFF1128 at 444.527 kb on - strand, within GFF1128 at 444.529 kb on + strand, within GFF1128 at 444.529 kb on + strand, within GFF1128 at 444.529 kb on + strand, within GFF1128 at 444.529 kb on + strand, within GFF1128 at 444.529 kb on + strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.530 kb on - strand, within GFF1128 at 444.532 kb on + strand, within GFF1128 at 444.532 kb on + strand, within GFF1128 at 444.532 kb on + strand, within GFF1128 at 444.533 kb on - strand, within GFF1128 at 444.562 kb on + strand, within GFF1128 at 444.562 kb on + strand, within GFF1128 at 444.562 kb on + strand, within GFF1128 at 444.563 kb on - strand, within GFF1128 at 444.563 kb on - strand, within GFF1128 at 444.563 kb on - strand, within GFF1128 at 444.563 kb on - strand, within GFF1128 at 444.563 kb on - strand, within GFF1128 at 444.563 kb on - strand, within GFF1128 at 444.814 kb on + strand, within GFF1128 at 444.814 kb on + strand, within GFF1128 at 444.814 kb on + strand, within GFF1128 at 444.814 kb on + strand, within GFF1128 at 444.814 kb on + strand, within GFF1128 at 444.814 kb on + strand, within GFF1128 at 444.815 kb on - strand, within GFF1128 at 444.815 kb on - strand, within GFF1128 at 444.815 kb on - strand, within GFF1128 at 444.815 kb on - strand, within GFF1128 at 444.815 kb on - strand, within GFF1128 at 444.856 kb on + strand, within GFF1128 at 444.856 kb on + strand, within GFF1128 at 445.031 kb on + strand at 445.032 kb on - strand at 445.032 kb on - strand at 445.076 kb on + strand at 445.077 kb on - strand at 445.077 kb on - strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.093 kb on + strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.094 kb on - strand at 445.135 kb on + strand at 445.135 kb on + strand at 445.135 kb on + strand at 445.136 kb on - strand at 445.136 kb on - strand at 445.136 kb on - strand at 445.136 kb on - strand at 445.136 kb on - strand at 445.136 kb on - strand at 445.136 kb on - strand at 445.136 kb on - strand at 445.158 kb on - strand at 445.326 kb on + strand, within GFF1129 at 445.326 kb on + strand, within GFF1129 at 445.327 kb on - strand, within GFF1129 at 445.327 kb on - strand, within GFF1129 at 445.327 kb on - strand, within GFF1129 at 445.386 kb on + strand, within GFF1129 at 445.386 kb on + strand, within GFF1129 at 445.386 kb on + strand, within GFF1129 at 445.386 kb on + strand, within GFF1129 at 445.386 kb on + strand, within GFF1129 at 445.386 kb on + strand, within GFF1129 at 445.386 kb on + strand, within GFF1129 at 445.386 kb on + strand, within GFF1129 at 445.387 kb on - strand, within GFF1129 at 445.387 kb on - strand, within GFF1129 at 445.387 kb on - strand, within GFF1129 at 445.387 kb on - strand, within GFF1129 at 445.387 kb on - strand, within GFF1129 at 445.387 kb on - strand, within GFF1129 at 445.389 kb on + strand, within GFF1129 at 445.389 kb on + strand, within GFF1129 at 445.390 kb on - strand, within GFF1129 at 445.390 kb on - strand, within GFF1129 at 445.390 kb on - strand, within GFF1129 at 445.488 kb on + strand, within GFF1129 at 445.489 kb on - strand, within GFF1129 at 445.489 kb on - strand, within GFF1129 at 445.489 kb on - strand, within GFF1129 at 445.489 kb on - strand, within GFF1129 at 445.707 kb on + strand, within GFF1129 at 445.707 kb on + strand, within GFF1129 at 445.708 kb on - strand, within GFF1129 at 445.708 kb on - strand, within GFF1129 at 445.800 kb on + strand, within GFF1129 at 445.800 kb on + strand, within GFF1129 at 446.060 kb on + strand, within GFF1129 at 446.060 kb on + strand, within GFF1129 at 446.136 kb on + strand, within GFF1129 at 446.137 kb on - strand, within GFF1129 at 446.257 kb on - strand, within GFF1129 at 446.494 kb on - strand, within GFF1129 at 446.539 kb on - strand at 446.539 kb on - strand at 446.649 kb on + strand at 446.649 kb on + strand at 446.649 kb on + strand at 446.649 kb on + strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.650 kb on - strand at 446.691 kb on + strand at 446.691 kb on + strand at 446.691 kb on + strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.692 kb on - strand at 446.718 kb on - strand at 446.775 kb on + strand at 446.775 kb on + strand at 446.775 kb on + strand at 446.775 kb on + strand at 446.775 kb on + strand at 446.775 kb on + strand at 446.776 kb on - strand at 446.776 kb on - strand at 446.776 kb on - strand at 446.776 kb on - strand at 446.776 kb on - strand at 446.776 kb on - strand at 447.138 kb on + strand, within GFF1130 at 447.138 kb on + strand, within GFF1130 at 447.138 kb on + strand, within GFF1130 at 447.139 kb on - strand, within GFF1130 at 447.139 kb on - strand, within GFF1130 at 447.139 kb on - strand, within GFF1130 at 447.139 kb on - strand, within GFF1130 at 447.139 kb on - strand, within GFF1130 at 447.277 kb on - strand, within GFF1130 at 447.277 kb on - strand, within GFF1130 at 447.300 kb on + strand, within GFF1130 at 447.301 kb on - strand, within GFF1130 at 447.363 kb on + strand, within GFF1130 at 447.363 kb on + strand, within GFF1130 at 447.364 kb on - strand, within GFF1130 at 447.364 kb on - strand, within GFF1130 at 447.364 kb on - strand, within GFF1130 at 447.364 kb on - strand, within GFF1130 at 447.364 kb on - strand, within GFF1130 at 447.532 kb on + strand at 447.532 kb on + strand at 447.532 kb on + strand at 447.532 kb on + strand at 447.533 kb on - strand at 447.533 kb on - strand at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 444,371 + -1.2 444,371 + -2.7 444,371 + -2.4 444,371 + -1.2 444,371 + +0.0 444,371 + -1.5 444,371 + -1.2 444,371 + +0.2 444,371 + -1.5 444,371 + -4.8 444,371 + -0.7 444,371 + -2.2 444,371 + -0.4 444,372 - -0.3 444,372 - -3.0 444,372 - -2.7 444,372 - -5.9 444,372 - -0.2 444,372 - +1.3 444,372 - -2.3 444,372 - -2.2 444,372 - -0.6 444,372 - -2.7 444,372 - -2.2 444,372 - -1.9 444,372 - -0.2 444,372 - -1.0 444,372 - -2.1 444,372 - -0.4 444,372 - +0.0 444,442 + +0.2 444,442 + -0.3 444,442 + -0.6 444,442 + +2.3 444,442 + -1.0 444,442 + -2.7 444,443 - -1.2 444,443 - -1.2 444,526 + GFF1128 0.15 -3.2 444,526 + GFF1128 0.15 -0.9 444,526 + GFF1128 0.15 +0.3 444,527 - GFF1128 0.15 +1.3 444,527 - GFF1128 0.15 -1.1 444,529 + GFF1128 0.16 +0.4 444,529 + GFF1128 0.16 +2.0 444,529 + GFF1128 0.16 +1.1 444,529 + GFF1128 0.16 -3.6 444,529 + GFF1128 0.16 +0.2 444,530 - GFF1128 0.16 +1.7 444,530 - GFF1128 0.16 +0.6 444,530 - GFF1128 0.16 -2.2 444,530 - GFF1128 0.16 +3.2 444,530 - GFF1128 0.16 +1.3 444,530 - GFF1128 0.16 +0.6 444,530 - GFF1128 0.16 +1.6 444,530 - GFF1128 0.16 -0.2 444,530 - GFF1128 0.16 -3.3 444,530 - GFF1128 0.16 -2.8 444,530 - GFF1128 0.16 -0.5 444,530 - GFF1128 0.16 +2.5 444,532 + GFF1128 0.16 -1.7 444,532 + GFF1128 0.16 -0.9 444,532 + GFF1128 0.16 +2.6 444,533 - GFF1128 0.16 +0.2 444,562 + GFF1128 0.22 +0.2 444,562 + GFF1128 0.22 +0.5 444,562 + GFF1128 0.22 +1.4 444,563 - GFF1128 0.22 -0.0 444,563 - GFF1128 0.22 -0.3 444,563 - GFF1128 0.22 +0.7 444,563 - GFF1128 0.22 -0.2 444,563 - GFF1128 0.22 -1.2 444,563 - GFF1128 0.22 -0.6 444,814 + GFF1128 0.67 -1.2 444,814 + GFF1128 0.67 +0.1 444,814 + GFF1128 0.67 +1.6 444,814 + GFF1128 0.67 +0.8 444,814 + GFF1128 0.67 +0.2 444,814 + GFF1128 0.67 -2.4 444,815 - GFF1128 0.67 -1.7 444,815 - GFF1128 0.67 -3.2 444,815 - GFF1128 0.67 +0.4 444,815 - GFF1128 0.67 -0.5 444,815 - GFF1128 0.67 -0.6 444,856 + GFF1128 0.74 -0.2 444,856 + GFF1128 0.74 -0.2 445,031 + +1.0 445,032 - +0.5 445,032 - -1.2 445,076 + -2.7 445,077 - +0.9 445,077 - -1.2 445,093 + -0.7 445,093 + -0.6 445,093 + -0.6 445,093 + -1.0 445,093 + -1.0 445,093 + -0.2 445,093 + -0.3 445,093 + -1.2 445,093 + -0.9 445,093 + -0.3 445,093 + +0.3 445,093 + -0.1 445,093 + -0.4 445,093 + -1.6 445,093 + -2.2 445,093 + +1.1 445,093 + -3.2 445,094 - -0.2 445,094 - +0.4 445,094 - -0.9 445,094 - +0.5 445,094 - +0.1 445,094 - -2.2 445,094 - -1.4 445,094 - -1.6 445,094 - +1.5 445,094 - +0.6 445,094 - -2.3 445,094 - +0.4 445,094 - -0.9 445,094 - +0.2 445,094 - -1.4 445,094 - -2.0 445,094 - -2.5 445,094 - -1.2 445,135 + -0.6 445,135 + -1.8 445,135 + +1.5 445,136 - -3.0 445,136 - -1.0 445,136 - -1.2 445,136 - +0.1 445,136 - -1.9 445,136 - -0.0 445,136 - -3.1 445,136 - -0.2 445,158 - -1.3 445,326 + GFF1129 0.13 +1.2 445,326 + GFF1129 0.13 +0.0 445,327 - GFF1129 0.13 +2.9 445,327 - GFF1129 0.13 +0.2 445,327 - GFF1129 0.13 +4.3 445,386 + GFF1129 0.17 -2.1 445,386 + GFF1129 0.17 -1.4 445,386 + GFF1129 0.17 -2.0 445,386 + GFF1129 0.17 +0.9 445,386 + GFF1129 0.17 -0.2 445,386 + GFF1129 0.17 +0.7 445,386 + GFF1129 0.17 -0.2 445,386 + GFF1129 0.17 +2.4 445,387 - GFF1129 0.17 +0.3 445,387 - GFF1129 0.17 -0.3 445,387 - GFF1129 0.17 +3.0 445,387 - GFF1129 0.17 -1.1 445,387 - GFF1129 0.17 -0.9 445,387 - GFF1129 0.17 +1.4 445,389 + GFF1129 0.17 +2.0 445,389 + GFF1129 0.17 -1.4 445,390 - GFF1129 0.17 +1.1 445,390 - GFF1129 0.17 +0.4 445,390 - GFF1129 0.17 -1.9 445,488 + GFF1129 0.23 -4.5 445,489 - GFF1129 0.23 +0.4 445,489 - GFF1129 0.23 -0.5 445,489 - GFF1129 0.23 +0.8 445,489 - GFF1129 0.23 +1.1 445,707 + GFF1129 0.37 -2.1 445,707 + GFF1129 0.37 -0.1 445,708 - GFF1129 0.37 +2.5 445,708 - GFF1129 0.37 -3.5 445,800 + GFF1129 0.43 -3.2 445,800 + GFF1129 0.43 -0.1 446,060 + GFF1129 0.60 -0.1 446,060 + GFF1129 0.60 +0.6 446,136 + GFF1129 0.65 -2.3 446,137 - GFF1129 0.65 -0.3 446,257 - GFF1129 0.72 +0.3 446,494 - GFF1129 0.87 -0.1 446,539 - -2.9 446,539 - -0.1 446,649 + -0.9 446,649 + -1.8 446,649 + +0.7 446,649 + -1.4 446,650 - -0.9 446,650 - -0.1 446,650 - +0.4 446,650 - +1.4 446,650 - +1.2 446,650 - -2.4 446,650 - -0.8 446,691 + -0.9 446,691 + -0.2 446,691 + -2.1 446,692 - +0.3 446,692 - -2.5 446,692 - +0.4 446,692 - -3.4 446,692 - -2.3 446,692 - -1.5 446,692 - -1.4 446,718 - -2.6 446,775 + -0.6 446,775 + +0.7 446,775 + -0.6 446,775 + -0.8 446,775 + -3.6 446,775 + -0.2 446,776 - +2.6 446,776 - -0.3 446,776 - +1.1 446,776 - -2.9 446,776 - -0.4 446,776 - -1.9 447,138 + GFF1130 0.54 -1.4 447,138 + GFF1130 0.54 -1.4 447,138 + GFF1130 0.54 +0.2 447,139 - GFF1130 0.54 -2.6 447,139 - GFF1130 0.54 -2.0 447,139 - GFF1130 0.54 +1.1 447,139 - GFF1130 0.54 -1.1 447,139 - GFF1130 0.54 -1.4 447,277 - GFF1130 0.73 +2.4 447,277 - GFF1130 0.73 -0.3 447,300 + GFF1130 0.76 +1.6 447,301 - GFF1130 0.76 -1.1 447,363 + GFF1130 0.84 +0.5 447,363 + GFF1130 0.84 +1.0 447,364 - GFF1130 0.85 +0.6 447,364 - GFF1130 0.85 +0.9 447,364 - GFF1130 0.85 +2.3 447,364 - GFF1130 0.85 +0.4 447,364 - GFF1130 0.85 -1.1 447,532 + +0.9 447,532 + +1.2 447,532 + -1.9 447,532 + -0.0 447,533 - +0.2 447,533 - -1.1 447,595 + GFF1131 0.12 -1.7 447,595 + GFF1131 0.12 -0.1 447,595 + GFF1131 0.12 -2.1 447,595 + GFF1131 0.12 -1.6 447,595 + GFF1131 0.12 -1.5 447,596 - GFF1131 0.12 -1.7 447,596 - GFF1131 0.12 -0.8 447,596 - GFF1131 0.12 -0.6 447,596 - GFF1131 0.12 -0.1 447,596 - GFF1131 0.12 +0.4 447,596 - GFF1131 0.12 +0.8
Or see this region's nucleotide sequence