Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF103 and GFF104 are separated by 71 nucleotides GFF104 and GFF105 are separated by 23 nucleotides GFF105 and GFF106 overlap by 4 nucleotides
GFF103 - General secretion pathway protein E, at 129,137 to 130,489
GFF103
GFF104 - General secretion pathway protein D, at 130,561 to 133,152
GFF104
GFF105 - hypothetical protein, at 133,176 to 133,748
GFF105
GFF106 - no description, at 133,745 to 134,890
GFF106
Position (kb) 130
131
132
133
134 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 129.989 kb on + strand, within GFF103 at 129.990 kb on - strand, within GFF103 at 129.990 kb on - strand, within GFF103 at 130.372 kb on - strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.694 kb on + strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.695 kb on - strand at 130.802 kb on + strand at 130.802 kb on + strand at 130.802 kb on + strand at 130.803 kb on - strand at 131.090 kb on + strand, within GFF104 at 131.091 kb on - strand, within GFF104 at 131.138 kb on + strand, within GFF104 at 131.138 kb on + strand, within GFF104 at 131.139 kb on - strand, within GFF104 at 131.139 kb on - strand, within GFF104 at 131.510 kb on + strand, within GFF104 at 131.511 kb on - strand, within GFF104 at 131.511 kb on - strand, within GFF104 at 131.511 kb on - strand, within GFF104 at 131.511 kb on - strand, within GFF104 at 131.739 kb on + strand, within GFF104 at 131.740 kb on - strand, within GFF104 at 131.740 kb on - strand, within GFF104 at 131.924 kb on + strand, within GFF104 at 131.924 kb on + strand, within GFF104 at 131.925 kb on - strand, within GFF104 at 132.323 kb on + strand, within GFF104 at 132.324 kb on - strand, within GFF104 at 132.620 kb on + strand, within GFF104 at 132.621 kb on - strand, within GFF104 at 132.621 kb on - strand, within GFF104 at 132.621 kb on - strand, within GFF104 at 132.621 kb on - strand, within GFF104 at 132.621 kb on - strand, within GFF104 at 132.621 kb on - strand, within GFF104 at 132.621 kb on - strand, within GFF104 at 132.621 kb on - strand, within GFF104 at 132.722 kb on + strand, within GFF104 at 133.192 kb on + strand at 133.192 kb on + strand at 133.193 kb on - strand at 133.784 kb on - strand at 133.930 kb on - strand, within GFF106 at 134.087 kb on + strand, within GFF106 at 134.088 kb on - strand, within GFF106
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 129,989 + GFF103 0.63 -0.3 129,990 - GFF103 0.63 -2.5 129,990 - GFF103 0.63 -0.5 130,372 - +1.1 130,694 + -2.4 130,694 + -0.3 130,694 + +0.7 130,694 + +2.8 130,694 + -0.6 130,694 + -0.7 130,694 + -1.9 130,694 + -0.9 130,695 - -0.7 130,695 - -1.0 130,695 - -0.3 130,695 - -1.4 130,695 - -1.5 130,695 - -2.5 130,695 - -1.7 130,695 - -0.3 130,695 - +0.2 130,802 + -2.8 130,802 + -1.2 130,802 + -1.3 130,803 - +0.5 131,090 + GFF104 0.20 -0.8 131,091 - GFF104 0.20 -0.2 131,138 + GFF104 0.22 +0.7 131,138 + GFF104 0.22 +0.3 131,139 - GFF104 0.22 -0.2 131,139 - GFF104 0.22 -1.9 131,510 + GFF104 0.37 -0.7 131,511 - GFF104 0.37 +1.3 131,511 - GFF104 0.37 -0.4 131,511 - GFF104 0.37 +2.7 131,511 - GFF104 0.37 -1.3 131,739 + GFF104 0.45 +0.2 131,740 - GFF104 0.45 +0.1 131,740 - GFF104 0.45 +0.3 131,924 + GFF104 0.53 -3.2 131,924 + GFF104 0.53 +0.3 131,925 - GFF104 0.53 +1.2 132,323 + GFF104 0.68 -1.3 132,324 - GFF104 0.68 -0.1 132,620 + GFF104 0.79 +0.0 132,621 - GFF104 0.79 -0.6 132,621 - GFF104 0.79 +0.2 132,621 - GFF104 0.79 +1.2 132,621 - GFF104 0.79 +0.1 132,621 - GFF104 0.79 -1.9 132,621 - GFF104 0.79 +0.2 132,621 - GFF104 0.79 -0.5 132,621 - GFF104 0.79 +0.8 132,722 + GFF104 0.83 +0.1 133,192 + -2.9 133,192 + -1.6 133,193 - -1.0 133,784 - +0.4 133,930 - GFF106 0.16 +1.9 134,087 + GFF106 0.30 +1.1 134,088 - GFF106 0.30 -3.0
Or see this region's nucleotide sequence