Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF885 and GFF886 are separated by 69 nucleotides GFF886 and GFF887 overlap by 4 nucleotides GFF887 and GFF888 are separated by 49 nucleotides
GFF885 - Transcriptional regulator, LysR family, at 194,288 to 195,205
GFF885
GFF886 - Protein of unknown function DUF1446, at 195,275 to 196,699
GFF886
GFF887 - Small uncharacterized protein Bpro_4170, at 196,696 to 197,064
GFF887
GFF888 - BUG/TctC family periplasmic protein, at 197,114 to 198,079
GFF888
Position (kb) 195
196
197 Strain fitness (log2 ratio) -2
-1
0
1 at 194.331 kb on + strand at 194.331 kb on + strand at 194.382 kb on + strand, within GFF885 at 194.382 kb on + strand, within GFF885 at 194.383 kb on - strand, within GFF885 at 194.383 kb on - strand, within GFF885 at 194.613 kb on + strand, within GFF885 at 195.231 kb on + strand at 195.232 kb on - strand at 195.258 kb on + strand at 195.271 kb on - strand at 195.291 kb on + strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.785 kb on + strand, within GFF886 at 195.786 kb on - strand, within GFF886 at 195.983 kb on + strand, within GFF886 at 196.002 kb on - strand, within GFF886 at 196.136 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.272 kb on - strand, within GFF886 at 196.272 kb on - strand, within GFF886 at 196.326 kb on - strand, within GFF886 at 196.565 kb on + strand at 196.565 kb on + strand at 196.565 kb on + strand at 196.886 kb on + strand, within GFF887 at 196.886 kb on + strand, within GFF887 at 196.886 kb on + strand, within GFF887 at 196.887 kb on - strand, within GFF887 at 196.887 kb on - strand, within GFF887 at 197.370 kb on - strand, within GFF888 at 197.567 kb on + strand, within GFF888 at 197.568 kb on - strand, within GFF888 at 197.568 kb on - strand, within GFF888 at 197.654 kb on + strand, within GFF888 at 197.654 kb on + strand, within GFF888 at 197.655 kb on - strand, within GFF888
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 194,331 + -0.3 194,331 + +1.1 194,382 + GFF885 0.10 +0.6 194,382 + GFF885 0.10 +0.2 194,383 - GFF885 0.10 -1.0 194,383 - GFF885 0.10 -1.2 194,613 + GFF885 0.35 -1.0 195,231 + -0.5 195,232 - +0.1 195,258 + +0.4 195,271 - -0.3 195,291 + -0.4 195,292 - -0.4 195,292 - -0.7 195,292 - -0.3 195,292 - -0.2 195,292 - -0.9 195,785 + GFF886 0.36 -0.8 195,786 - GFF886 0.36 -1.6 195,983 + GFF886 0.50 -0.2 196,002 - GFF886 0.51 -0.9 196,136 + GFF886 0.60 -0.8 196,271 + GFF886 0.70 +0.2 196,271 + GFF886 0.70 -0.3 196,271 + GFF886 0.70 +0.2 196,271 + GFF886 0.70 -0.9 196,271 + GFF886 0.70 -1.1 196,271 + GFF886 0.70 +0.2 196,272 - GFF886 0.70 -0.7 196,272 - GFF886 0.70 +0.4 196,326 - GFF886 0.74 +0.6 196,565 + +0.9 196,565 + -0.6 196,565 + +0.1 196,886 + GFF887 0.51 +0.0 196,886 + GFF887 0.51 -1.9 196,886 + GFF887 0.51 -0.4 196,887 - GFF887 0.52 -0.8 196,887 - GFF887 0.52 +1.1 197,370 - GFF888 0.27 -1.2 197,567 + GFF888 0.47 -0.2 197,568 - GFF888 0.47 +0.1 197,568 - GFF888 0.47 -1.2 197,654 + GFF888 0.56 +0.7 197,654 + GFF888 0.56 +0.5 197,655 - GFF888 0.56 -0.3
Or see this region's nucleotide sequence