Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF883 and GFF884 are separated by 31 nucleotides GFF884 and GFF885 are separated by 141 nucleotides
GFF883 - 2-pyrone-4,6-dicarboxylic acid hydrolase (EC 3.1.1.57), at 192,262 to 193,137
GFF883
GFF884 - BUG/TctC family periplasmic protein, at 193,169 to 194,146
GFF884
GFF885 - Transcriptional regulator, LysR family, at 194,288 to 195,205
GFF885
Position (kb) 193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 192.233 kb on + strand at 192.275 kb on + strand at 192.275 kb on + strand at 192.467 kb on + strand, within GFF883 at 192.467 kb on + strand, within GFF883 at 192.468 kb on - strand, within GFF883 at 192.468 kb on - strand, within GFF883 at 192.468 kb on - strand, within GFF883 at 192.468 kb on - strand, within GFF883 at 192.656 kb on + strand, within GFF883 at 192.657 kb on - strand, within GFF883 at 192.657 kb on - strand, within GFF883 at 193.008 kb on - strand, within GFF883 at 193.526 kb on + strand, within GFF884 at 193.707 kb on + strand, within GFF884 at 193.707 kb on + strand, within GFF884 at 193.708 kb on - strand, within GFF884 at 193.708 kb on - strand, within GFF884 at 193.708 kb on - strand, within GFF884 at 193.816 kb on - strand, within GFF884 at 194.194 kb on + strand at 194.194 kb on + strand at 194.222 kb on - strand at 194.222 kb on - strand at 194.242 kb on + strand at 194.243 kb on - strand at 194.243 kb on - strand at 194.243 kb on - strand at 194.244 kb on + strand at 194.331 kb on + strand at 194.331 kb on + strand at 194.382 kb on + strand, within GFF885 at 194.382 kb on + strand, within GFF885 at 194.383 kb on - strand, within GFF885 at 194.383 kb on - strand, within GFF885 at 194.613 kb on + strand, within GFF885
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 192,233 + -0.4 192,275 + -0.9 192,275 + -0.9 192,467 + GFF883 0.23 -0.7 192,467 + GFF883 0.23 +0.4 192,468 - GFF883 0.24 -2.9 192,468 - GFF883 0.24 -0.5 192,468 - GFF883 0.24 -0.6 192,468 - GFF883 0.24 -1.8 192,656 + GFF883 0.45 -0.0 192,657 - GFF883 0.45 +0.4 192,657 - GFF883 0.45 -1.2 193,008 - GFF883 0.85 -0.5 193,526 + GFF884 0.37 -0.5 193,707 + GFF884 0.55 -0.2 193,707 + GFF884 0.55 -1.4 193,708 - GFF884 0.55 -2.2 193,708 - GFF884 0.55 +1.0 193,708 - GFF884 0.55 -0.6 193,816 - GFF884 0.66 -1.0 194,194 + -0.4 194,194 + -0.6 194,222 - -0.2 194,222 - +0.1 194,242 + -1.9 194,243 - +0.7 194,243 - -0.2 194,243 - -1.0 194,244 + -0.2 194,331 + -0.3 194,331 + +1.1 194,382 + GFF885 0.10 +0.6 194,382 + GFF885 0.10 +0.2 194,383 - GFF885 0.10 -1.0 194,383 - GFF885 0.10 -1.2 194,613 + GFF885 0.35 -1.0
Or see this region's nucleotide sequence