Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7370 and GFF7371 are separated by 94 nucleotides GFF7371 and GFF7372 are separated by 1 nucleotides GFF7372 and GFF7373 are separated by 72 nucleotides
GFF7370 - PAS domain with LuxR-type DNA-binding domain, at 73 to 639
GFF7370
GFF7371 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 734 to 1,546
GFF7371
GFF7372 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 1,548 to 2,186
GFF7372
GFF7373 - CaiB/BaiF family protein, at 2,259 to 3,650
GFF7373
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.122 kb on + strand at 0.122 kb on + strand at 0.123 kb on - strand at 0.123 kb on - strand at 0.123 kb on - strand at 0.417 kb on - strand, within GFF7370 at 0.417 kb on - strand, within GFF7370 at 0.485 kb on + strand, within GFF7370 at 0.485 kb on + strand, within GFF7370 at 0.660 kb on + strand at 0.661 kb on - strand at 0.663 kb on + strand at 0.664 kb on - strand at 0.667 kb on + strand at 0.667 kb on + strand at 0.667 kb on + strand at 0.667 kb on + strand at 0.667 kb on + strand at 0.668 kb on - strand at 0.675 kb on + strand at 0.676 kb on - strand at 0.679 kb on + strand at 0.679 kb on + strand at 0.679 kb on + strand at 0.679 kb on + strand at 0.679 kb on + strand at 0.680 kb on - strand at 0.680 kb on - strand at 0.680 kb on - strand at 0.680 kb on - strand at 0.680 kb on - strand at 0.680 kb on - strand at 0.747 kb on - strand at 0.965 kb on + strand, within GFF7371 at 0.965 kb on + strand, within GFF7371 at 0.965 kb on + strand, within GFF7371 at 0.966 kb on - strand, within GFF7371 at 0.998 kb on + strand, within GFF7371 at 0.998 kb on + strand, within GFF7371 at 0.998 kb on + strand, within GFF7371 at 0.998 kb on + strand, within GFF7371 at 0.999 kb on - strand, within GFF7371 at 0.999 kb on - strand, within GFF7371 at 0.999 kb on - strand, within GFF7371 at 1.157 kb on + strand, within GFF7371 at 1.157 kb on + strand, within GFF7371 at 1.157 kb on + strand, within GFF7371 at 1.157 kb on + strand, within GFF7371 at 1.158 kb on - strand, within GFF7371 at 1.158 kb on - strand, within GFF7371 at 1.158 kb on - strand, within GFF7371 at 1.158 kb on - strand, within GFF7371 at 1.158 kb on - strand, within GFF7371 at 1.158 kb on - strand, within GFF7371 at 1.158 kb on - strand, within GFF7371 at 1.361 kb on + strand, within GFF7371 at 1.361 kb on + strand, within GFF7371 at 1.361 kb on + strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.609 kb on - strand at 1.609 kb on - strand at 1.609 kb on - strand at 1.609 kb on - strand at 1.634 kb on + strand, within GFF7372 at 1.634 kb on + strand, within GFF7372 at 1.634 kb on + strand, within GFF7372 at 1.635 kb on - strand, within GFF7372 at 1.635 kb on - strand, within GFF7372 at 2.184 kb on + strand at 2.185 kb on - strand at 2.524 kb on + strand, within GFF7373 at 2.525 kb on - strand, within GFF7373
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 122 + -1.5 122 + -2.6 123 - -0.8 123 - -0.8 123 - -0.1 417 - GFF7370 0.61 -0.6 417 - GFF7370 0.61 -1.9 485 + GFF7370 0.73 -1.9 485 + GFF7370 0.73 -0.2 660 + -0.0 661 - +1.0 663 + +0.0 664 - -0.8 667 + -0.3 667 + +0.3 667 + +0.2 667 + -0.2 667 + -0.4 668 - +0.9 675 + -0.7 676 - -0.1 679 + +0.8 679 + -0.1 679 + +0.3 679 + +1.1 679 + -0.1 680 - -0.7 680 - -0.9 680 - +0.7 680 - +1.2 680 - -0.8 680 - -0.2 747 - -0.7 965 + GFF7371 0.28 -0.5 965 + GFF7371 0.28 +0.1 965 + GFF7371 0.28 +0.6 966 - GFF7371 0.29 +1.4 998 + GFF7371 0.32 +0.6 998 + GFF7371 0.32 -1.2 998 + GFF7371 0.32 -0.5 998 + GFF7371 0.32 -0.2 999 - GFF7371 0.33 +0.0 999 - GFF7371 0.33 +0.0 999 - GFF7371 0.33 +0.6 1,157 + GFF7371 0.52 -0.2 1,157 + GFF7371 0.52 +1.6 1,157 + GFF7371 0.52 -1.8 1,157 + GFF7371 0.52 +0.1 1,158 - GFF7371 0.52 -0.4 1,158 - GFF7371 0.52 +0.9 1,158 - GFF7371 0.52 +0.4 1,158 - GFF7371 0.52 -0.3 1,158 - GFF7371 0.52 +0.1 1,158 - GFF7371 0.52 -0.5 1,158 - GFF7371 0.52 +1.0 1,361 + GFF7371 0.77 -0.5 1,361 + GFF7371 0.77 -0.3 1,361 + GFF7371 0.77 +1.9 1,362 - GFF7371 0.77 +0.1 1,362 - GFF7371 0.77 +1.4 1,362 - GFF7371 0.77 +0.8 1,362 - GFF7371 0.77 -0.5 1,362 - GFF7371 0.77 -1.4 1,362 - GFF7371 0.77 -1.3 1,362 - GFF7371 0.77 -0.1 1,362 - GFF7371 0.77 +2.0 1,608 + +0.6 1,608 + -0.6 1,608 + -1.0 1,608 + -0.6 1,608 + +0.0 1,608 + -0.8 1,608 + +0.1 1,608 + +0.1 1,609 - +0.3 1,609 - +0.8 1,609 - +1.1 1,609 - -1.4 1,634 + GFF7372 0.13 -0.3 1,634 + GFF7372 0.13 +2.0 1,634 + GFF7372 0.13 +0.3 1,635 - GFF7372 0.14 -0.2 1,635 - GFF7372 0.14 -0.0 2,184 + -0.4 2,185 - -0.1 2,524 + GFF7373 0.19 -0.7 2,525 - GFF7373 0.19 +1.4
Or see this region's nucleotide sequence