Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7332 and GFF7333 are separated by 65 nucleotides GFF7333 and GFF7334 are separated by 37 nucleotides GFF7334 and GFF7335 are separated by 139 nucleotides GFF7335 and GFF7336 are separated by 41 nucleotides
GFF7332 - Intracellular protease, at 2,480 to 3,163
GFF7332
GFF7333 - Transcriptional regulator, MerR family, at 3,229 to 3,717
GFF7333
GFF7334 - Nucleoside-diphosphate-sugar epimerases, at 3,755 to 4,717
GFF7334
GFF7335 - no description, at 4,857 to 5,003
GFF7335
GFF7336 - Alkanesulfonate utilization operon LysR-family regulator Cbl, at 5,045 to 5,980
GFF7336
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1
2 at 2.866 kb on - strand, within GFF7332 at 2.919 kb on - strand, within GFF7332 at 3.092 kb on + strand, within GFF7332 at 3.120 kb on + strand at 3.208 kb on + strand at 3.209 kb on - strand at 3.209 kb on - strand at 3.230 kb on + strand at 3.362 kb on - strand, within GFF7333 at 3.362 kb on - strand, within GFF7333 at 3.362 kb on - strand, within GFF7333 at 3.368 kb on - strand, within GFF7333 at 3.566 kb on + strand, within GFF7333 at 3.624 kb on - strand, within GFF7333 at 3.853 kb on + strand, within GFF7334 at 3.854 kb on - strand, within GFF7334 at 3.977 kb on + strand, within GFF7334 at 3.978 kb on - strand, within GFF7334 at 4.100 kb on + strand, within GFF7334 at 4.100 kb on + strand, within GFF7334 at 4.100 kb on + strand, within GFF7334 at 4.100 kb on + strand, within GFF7334 at 4.100 kb on + strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.101 kb on - strand, within GFF7334 at 4.106 kb on + strand, within GFF7334 at 4.466 kb on + strand, within GFF7334 at 4.518 kb on - strand, within GFF7334 at 4.670 kb on + strand at 4.670 kb on + strand at 4.671 kb on - strand at 4.758 kb on - strand at 4.771 kb on + strand at 4.771 kb on + strand at 4.828 kb on + strand at 4.829 kb on - strand at 4.968 kb on + strand, within GFF7335 at 5.013 kb on + strand at 5.047 kb on - strand at 5.124 kb on + strand at 5.125 kb on - strand at 5.130 kb on + strand at 5.130 kb on + strand at 5.130 kb on + strand at 5.131 kb on - strand at 5.131 kb on - strand at 5.131 kb on - strand at 5.281 kb on - strand, within GFF7336 at 5.389 kb on - strand, within GFF7336
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 2,866 - GFF7332 0.56 +0.1 2,919 - GFF7332 0.64 -0.6 3,092 + GFF7332 0.89 -1.4 3,120 + -0.6 3,208 + -0.8 3,209 - -0.7 3,209 - -0.9 3,230 + -0.6 3,362 - GFF7333 0.27 -0.2 3,362 - GFF7333 0.27 -1.4 3,362 - GFF7333 0.27 -0.2 3,368 - GFF7333 0.28 +0.1 3,566 + GFF7333 0.69 -1.2 3,624 - GFF7333 0.81 -0.4 3,853 + GFF7334 0.10 +0.0 3,854 - GFF7334 0.10 +0.6 3,977 + GFF7334 0.23 -0.7 3,978 - GFF7334 0.23 -0.2 4,100 + GFF7334 0.36 -0.3 4,100 + GFF7334 0.36 -1.4 4,100 + GFF7334 0.36 -0.1 4,100 + GFF7334 0.36 +0.3 4,100 + GFF7334 0.36 +2.6 4,101 - GFF7334 0.36 +0.1 4,101 - GFF7334 0.36 -1.8 4,101 - GFF7334 0.36 -0.7 4,101 - GFF7334 0.36 -0.6 4,101 - GFF7334 0.36 +0.1 4,101 - GFF7334 0.36 -0.2 4,101 - GFF7334 0.36 +0.4 4,106 + GFF7334 0.36 -0.0 4,466 + GFF7334 0.74 -0.3 4,518 - GFF7334 0.79 -1.4 4,670 + -1.0 4,670 + -0.2 4,671 - -1.2 4,758 - -0.4 4,771 + +0.6 4,771 + -0.6 4,828 + -0.2 4,829 - +0.0 4,968 + GFF7335 0.76 -0.7 5,013 + +2.2 5,047 - +0.3 5,124 + -2.0 5,125 - -0.7 5,130 + -0.5 5,130 + -0.0 5,130 + -1.2 5,131 - -1.2 5,131 - +1.6 5,131 - +0.9 5,281 - GFF7336 0.25 +0.4 5,389 - GFF7336 0.37 +0.3
Or see this region's nucleotide sequence