Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7221 and GFF7222 are separated by 154 nucleotides GFF7222 and GFF7223 are separated by 62 nucleotides
GFF7221 - Protein lysine acetyltransferase Pat (EC 2.3.1.-), at 480 to 3,188
GFF7221
GFF7222 - Coenzyme F390 synthetase, at 3,343 to 4,752
GFF7222
GFF7223 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 4,815 to 5,999
GFF7223
Position (kb) 3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 2.408 kb on - strand, within GFF7221 at 3.373 kb on + strand at 3.373 kb on + strand at 3.373 kb on + strand at 3.373 kb on + strand at 3.373 kb on + strand at 3.373 kb on + strand at 3.374 kb on - strand at 3.374 kb on - strand at 3.674 kb on - strand, within GFF7222 at 4.001 kb on - strand, within GFF7222 at 4.150 kb on + strand, within GFF7222 at 4.151 kb on - strand, within GFF7222 at 4.331 kb on - strand, within GFF7222 at 4.810 kb on + strand at 4.810 kb on + strand at 4.810 kb on + strand at 4.811 kb on - strand at 4.811 kb on - strand at 4.831 kb on - strand at 4.831 kb on - strand at 5.127 kb on + strand, within GFF7223 at 5.127 kb on + strand, within GFF7223 at 5.127 kb on + strand, within GFF7223 at 5.128 kb on - strand, within GFF7223 at 5.128 kb on - strand, within GFF7223 at 5.128 kb on - strand, within GFF7223 at 5.128 kb on - strand, within GFF7223 at 5.130 kb on + strand, within GFF7223 at 5.212 kb on - strand, within GFF7223 at 5.341 kb on + strand, within GFF7223 at 5.341 kb on + strand, within GFF7223 at 5.359 kb on - strand, within GFF7223 at 5.517 kb on + strand, within GFF7223 at 5.517 kb on + strand, within GFF7223 at 5.517 kb on + strand, within GFF7223 at 5.517 kb on + strand, within GFF7223 at 5.618 kb on - strand, within GFF7223 at 5.640 kb on + strand, within GFF7223 at 5.641 kb on - strand, within GFF7223 at 5.658 kb on + strand, within GFF7223 at 5.658 kb on + strand, within GFF7223 at 5.659 kb on - strand, within GFF7223 at 5.659 kb on - strand, within GFF7223 at 5.659 kb on - strand, within GFF7223
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 2,408 - GFF7221 0.71 -0.3 3,373 + +0.7 3,373 + -0.1 3,373 + -0.7 3,373 + -1.2 3,373 + -0.8 3,373 + -0.9 3,374 - +0.9 3,374 - +0.1 3,674 - GFF7222 0.23 -3.1 4,001 - GFF7222 0.47 -0.9 4,150 + GFF7222 0.57 -1.0 4,151 - GFF7222 0.57 +0.4 4,331 - GFF7222 0.70 -0.6 4,810 + +0.3 4,810 + -0.4 4,810 + -0.6 4,811 - -1.3 4,811 - -1.6 4,831 - +1.1 4,831 - -0.3 5,127 + GFF7223 0.26 -0.1 5,127 + GFF7223 0.26 -1.5 5,127 + GFF7223 0.26 -1.2 5,128 - GFF7223 0.26 +0.4 5,128 - GFF7223 0.26 -0.7 5,128 - GFF7223 0.26 -0.3 5,128 - GFF7223 0.26 -0.6 5,130 + GFF7223 0.27 +0.1 5,212 - GFF7223 0.34 -0.6 5,341 + GFF7223 0.44 +0.3 5,341 + GFF7223 0.44 -1.6 5,359 - GFF7223 0.46 -0.6 5,517 + GFF7223 0.59 +0.2 5,517 + GFF7223 0.59 +0.6 5,517 + GFF7223 0.59 -0.5 5,517 + GFF7223 0.59 +0.5 5,618 - GFF7223 0.68 -0.5 5,640 + GFF7223 0.70 -0.5 5,641 - GFF7223 0.70 -0.9 5,658 + GFF7223 0.71 -0.9 5,658 + GFF7223 0.71 +0.7 5,659 - GFF7223 0.71 +0.3 5,659 - GFF7223 0.71 -0.7 5,659 - GFF7223 0.71 -1.2
Or see this region's nucleotide sequence