Strain Fitness in Variovorax sp. SCN45 around GFF7167

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
30,566	+				+0.0
30,567	-				-1.6
30,567	-				+0.3
30,567	-				-0.7
30,669	+				-0.4
30,707	+				+0.3
30,707	+				+0.4
30,755	+				-1.4
30,755	+				+0.0
30,907	+		GFF7166	0.18	-0.8
30,907	+		GFF7166	0.18	+0.9
30,907	+		GFF7166	0.18	-0.5
30,907	+		GFF7166	0.18	+0.3
30,907	+		GFF7166	0.18	+0.6
30,907	+		GFF7166	0.18	-0.3
30,908	-		GFF7166	0.19	-0.8
30,908	-		GFF7166	0.19	-0.6
31,150	+		GFF7166	0.76	-0.8
31,150	+		GFF7166	0.76	-0.0
31,150	+		GFF7166	0.76	-0.6
31,150	+		GFF7166	0.76	-1.5
31,151	-		GFF7166	0.76	-0.3
31,151	-		GFF7166	0.76	-0.6
31,151	-		GFF7166	0.76	-0.5
31,151	-		GFF7166	0.76	-0.4
31,151	-		GFF7166	0.76	+0.3
31,151	-		GFF7166	0.76	-0.4
31,151	-		GFF7166	0.76	-1.8
31,151	-		GFF7166	0.76	-1.1
31,162	+		GFF7166	0.79	+0.3
31,162	+		GFF7166	0.79	-0.6
31,162	+		GFF7166	0.79	+0.7
31,162	+		GFF7166	0.79	-0.2
31,162	+		GFF7166	0.79	-1.3
31,162	+		GFF7166	0.79	-0.9
31,162	+		GFF7166	0.79	+0.6
31,162	+		GFF7166	0.79	-0.2
31,162	+		GFF7166	0.79	-0.6
31,162	+		GFF7166	0.79	-0.4
31,162	+		GFF7166	0.79	+1.4
31,162	+		GFF7166	0.79	-0.5
31,162	+		GFF7166	0.79	-2.1
31,162	+		GFF7166	0.79	-0.3
31,163	-		GFF7166	0.79	-0.6
31,163	-		GFF7166	0.79	-2.4
31,163	-		GFF7166	0.79	-0.6
31,163	-		GFF7166	0.79	-0.6
31,163	-		GFF7166	0.79	-0.1
31,163	-		GFF7166	0.79	-0.9
31,163	-		GFF7166	0.79	-0.4
31,163	-		GFF7166	0.79	+4.2
31,210	+				-1.0
31,210	+				+0.8
31,210	+				+0.9
31,210	+				-0.9
31,210	+				+0.2
31,210	+				-0.0
31,210	+				-2.0
31,210	+				-0.3
31,210	+				-0.9
31,210	+				-0.9
31,210	+				+0.9
31,210	+				+0.4
31,210	+				-0.6
31,210	+				+0.5
31,210	+				+0.1
31,210	+				-0.9
31,210	+				-0.1
31,210	+				+0.7
31,210	+				+0.5
31,210	+				-0.4
31,210	+				-0.7
31,210	+				-0.5
31,210	+				-0.4
31,210	+				-0.5
31,210	+				-1.8
31,210	+				-1.6
31,210	+				+0.9
31,210	+				-0.6
31,210	+				-0.2
31,210	+				-0.1
31,210	+				+0.3
31,211	-				-0.1
31,211	-				+1.2
31,211	-				-0.0
31,211	-				-0.7
31,211	-				-0.5
31,211	-				-1.2
31,211	-				+1.3
31,211	-				+0.9
31,211	-				-0.1
31,211	-				+0.9
31,211	-				-1.4
31,211	-				+0.2
31,211	-				-0.5
31,211	-				+0.5
31,211	-				-0.0
31,211	-				+0.2
31,211	-				+0.1
31,211	-				+0.4
31,211	-				-1.0
31,211	-				-0.6
31,211	-				-0.5
31,211	-				-0.8
31,211	-				+0.4
31,211	-				+0.9
31,211	-				+0.6
31,211	-				-0.4
31,211	-				-0.3
31,211	-				-0.3
31,211	-				+0.2
31,211	-				-0.6
31,211	-				+0.8
31,211	-				+0.7
31,298	+				+0.2
31,330	+				-0.3
31,331	-				+0.1
31,405	+				+0.5
31,405	+				+0.6
31,405	+				-0.1
31,405	+				+0.6
31,406	-				-0.0
31,406	-				+0.4
31,406	-				+0.1
31,499	+				+0.2
31,499	+				-0.0
31,499	+				+0.4
31,500	-				-0.9
31,500	-				+1.3
31,514	+				+1.3
31,514	+				+0.2
31,607	+		GFF7167	0.18	+0.5
31,607	+		GFF7167	0.18	-0.1
31,607	+		GFF7167	0.18	+0.5
31,607	+		GFF7167	0.18	-1.0
31,607	+		GFF7167	0.18	-1.2
31,607	+		GFF7167	0.18	-0.3
31,607	+		GFF7167	0.18	-0.5
31,607	+		GFF7167	0.18	+0.0
31,607	+		GFF7167	0.18	-1.3
31,607	+		GFF7167	0.18	+0.2
31,607	+		GFF7167	0.18	+1.2
31,607	+		GFF7167	0.18	+0.6
31,608	-		GFF7167	0.19	-0.2
31,608	-		GFF7167	0.19	+0.2
31,608	-		GFF7167	0.19	-1.8
31,608	-		GFF7167	0.19	-0.5
31,608	-		GFF7167	0.19	+0.2
31,608	-		GFF7167	0.19	-0.7
31,608	-		GFF7167	0.19	+0.3
31,608	-		GFF7167	0.19	-0.7
31,608	-		GFF7167	0.19	+0.0
31,608	-		GFF7167	0.19	-0.6
32,135	+		GFF7167	0.68	-0.8
32,135	+		GFF7167	0.68	+0.4
32,135	+		GFF7167	0.68	+1.4
32,135	+		GFF7167	0.68	-0.0
32,135	+		GFF7167	0.68	-0.3
32,135	+		GFF7167	0.68	-1.2
32,135	+		GFF7167	0.68	+1.9
32,135	+		GFF7167	0.68	-0.2
32,136	-		GFF7167	0.69	-0.3
32,136	-		GFF7167	0.69	-0.5
32,136	-		GFF7167	0.69	-0.8
32,136	-		GFF7167	0.69	-0.7
32,136	-		GFF7167	0.69	-0.7
32,136	-		GFF7167	0.69	-1.2
32,136	-		GFF7167	0.69	-1.1
32,136	-		GFF7167	0.69	+0.3
32,136	-		GFF7167	0.69	-0.8
32,136	-		GFF7167	0.69	+0.5
32,297	+		GFF7167	0.84	-1.0
32,297	+		GFF7167	0.84	+0.2
32,298	-		GFF7167	0.84	-0.7
32,298	-		GFF7167	0.84	+0.1
32,359	+		GFF7167	0.90	+0.9
32,359	+		GFF7167	0.90	-0.4
32,359	+		GFF7167	0.90	-0.4
32,359	+		GFF7167	0.90	-1.1
32,360	-		GFF7167	0.90	-1.4
32,360	-		GFF7167	0.90	-0.6
32,360	-		GFF7167	0.90	-1.6
32,360	-		GFF7167	0.90	-0.1
32,360	-		GFF7167	0.90	-0.1
32,682	+		GFF7168	0.69	-1.4
32,748	+				+0.6
32,748	+				-1.2
32,748	+				-1.2
32,748	+				-0.8
32,748	+				+0.5
32,748	+				+0.3
32,748	+				-0.1
32,748	+				+0.9
32,748	+				+0.1
32,748	+				-0.8
32,749	-				-0.6
32,749	-				-0.3
32,749	-				-0.5
32,749	-				-0.6
32,749	-				+0.2
32,749	-				-0.4
32,749	-				-0.7
32,749	-				-0.7
32,749	-				-0.4
32,749	-				+0.4
32,749	-				-1.5
32,809	+				+0.0
32,809	+				-1.0
32,809	+				-0.8
32,810	-				-1.4
32,810	-				+0.2
32,810	-				-1.3
33,247	+		GFF7169	0.41	-0.3
33,247	+		GFF7169	0.41	+0.9
33,247	+		GFF7169	0.41	-1.4
33,247	+		GFF7169	0.41	-1.3
33,247	+		GFF7169	0.41	-0.7
33,247	+		GFF7169	0.41	-0.4
33,248	-		GFF7169	0.41	-0.5
33,248	-		GFF7169	0.41	-0.4
33,248	-		GFF7169	0.41	-0.6
33,335	-		GFF7169	0.49	-0.4
33,335	-		GFF7169	0.49	-0.2